Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C15orf41 Gene

Aliases for C15orf41 Gene

  • Chromosome 15 Open Reading Frame 41 2 3 5
  • Uncharacterized Protein C15orf41 3
  • Protein HH114 4
  • HH114 3

External Ids for C15orf41 Gene

Previous GeneCards Identifiers for C15orf41 Gene

  • GC15P034721
  • GC15P036871
  • GC15P013717

Summaries for C15orf41 Gene

Entrez Gene Summary for C15orf41 Gene

  • This gene encodes a protein with two predicted helix-turn-helix domains. Mutations in this gene were found in families with congenital dyserythropoietic anemia type Ib. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Mar 2014]

GeneCards Summary for C15orf41 Gene

C15orf41 (Chromosome 15 Open Reading Frame 41) is a Protein Coding gene. Diseases associated with C15orf41 include Anemia, Congenital Dyserythropoietic, Type Ib and Anemia, Congenital Dyserythropoietic, Type Ia.

Additional gene information for C15orf41 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C15orf41 Gene

Genomics for C15orf41 Gene

GeneHancer (GH) Regulatory Elements for C15orf41 Gene

Promoters and enhancers for C15orf41 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J036578 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 656.2 -0.1 -70 1.9 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 ZNF207 C15orf41 GC15P036572
GH15J036611 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 650.3 +32.9 32929 2.4 JUN ZSCAN4 ZFP37 ZEB2 FOSL1 JUND SCRT2 ZNF629 ZNF600 FOS LOC751603 C15orf41 GC15P036600
GH15J036594 Promoter/Enhancer 0.7 EPDnew dbSUPER 650.4 +15.3 15255 0.1 GC15P036595 C15orf41
GH15J035751 Promoter 0.5 EPDnew 650 -828.6 -828565 0.1 C15orf41 ENSG00000259217 GC15P035710 DPH6-DT
GH15J036580 Enhancer 0.3 ENCODE 655 -1.1 -1088 0.2 ZKSCAN8 C15orf41 GC15P036572
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C15orf41 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C15orf41 gene promoter:
  • GATA-2
  • c-Ets-1
  • Nkx2-5
  • c-Rel
  • E4BP4
  • Evi-1
  • IRF-2
  • FOXD3
  • Pax-5
  • FOXO3

Genomic Locations for C15orf41 Gene

Genomic Locations for C15orf41 Gene
230,658 bases
Plus strand
230,638 bases
Plus strand

Genomic View for C15orf41 Gene

Genes around C15orf41 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C15orf41 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C15orf41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C15orf41 Gene

Proteins for C15orf41 Gene

  • Protein details for C15orf41 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C15orf41
    Protein Accession:
    Secondary Accessions:
    • B2RD87

    Protein attributes for C15orf41 Gene

    281 amino acids
    Molecular mass:
    32264 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAH06254.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for C15orf41 Gene


neXtProt entry for C15orf41 Gene

Post-translational modifications for C15orf41 Gene

  • Ubiquitination at Lys176
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for C15orf41 Gene

Domains & Families for C15orf41 Gene

Gene Families for C15orf41 Gene

Human Protein Atlas (HPA):
  • Disease related genes
  • Predicted intracellular proteins

Protein Domains for C15orf41 Gene


Suggested Antigen Peptide Sequences for C15orf41 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C15orf41: view

No data available for UniProtKB/Swiss-Prot for C15orf41 Gene

Function for C15orf41 Gene

genes like me logo Genes that share phenotypes with C15orf41: view

Human Phenotype Ontology for C15orf41 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C15orf41

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for C15orf41 Gene

Localization for C15orf41 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C15orf41 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 1
mitochondrion 1
peroxisome 1

Subcellular locations from the

Human Protein Atlas (HPA)

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C15orf41 Gene

Pathways & Interactions for C15orf41 Gene

SuperPathways for C15orf41 Gene

No Data Available

Interacting Proteins for C15orf41 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: ENSP00000401362 Q9Y2V0-CO041_HUMAN for C15orf41 Gene via STRING IID

Gene Ontology (GO) - Biological Process for C15orf41 Gene


No data available for Pathways by source and SIGNOR curated interactions for C15orf41 Gene

Drugs & Compounds for C15orf41 Gene

No Compound Related Data Available

Transcripts for C15orf41 Gene

Unigene Clusters for C15orf41 Gene

Chromosome 15 open reading frame 41:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C15orf41

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C15orf41 Gene

No ASD Table

Relevant External Links for C15orf41 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C15orf41 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C15orf41 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C15orf41 Gene

This gene is overexpressed in Heart - Left Ventricle (x14.2).

Protein differential expression in normal tissues from HIPED for C15orf41 Gene

This gene is overexpressed in Fetal ovary (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C15orf41 Gene

Protein tissue co-expression partners for C15orf41 Gene

NURSA nuclear receptor signaling pathways regulating expression of C15orf41 Gene:


SOURCE GeneReport for Unigene cluster for C15orf41 Gene:


Evidence on tissue expression from TISSUES for C15orf41 Gene

  • Nervous system(2)
genes like me logo Genes that share expression patterns with C15orf41: view

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for C15orf41 Gene

Orthologs for C15orf41 Gene

This gene was present in the common ancestor of animals.

Orthologs for C15orf41 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C15orf41 34
  • 100 (a)
C15H15orf41 33
  • 99.29 (n)
(Canis familiaris)
Mammalia C15orf41 34
  • 97 (a)
C30H15orf41 33
  • 94.9 (n)
(Bos Taurus)
Mammalia C10H15ORF41 34
  • 96 (a)
C10H15orf41 33
  • 93.83 (n)
(Rattus norvegicus)
Mammalia RGD1563680 33
  • 91.93 (n)
(Mus musculus)
Mammalia BC052040 16 34 33
  • 91.58 (n)
(Monodelphis domestica)
Mammalia C15orf41 34
  • 81 (a)
(Ornithorhynchus anatinus)
Mammalia C15orf41 34
  • 77 (a)
(Gallus gallus)
Aves C5H15ORF41 34 33
  • 83.33 (n)
(Anolis carolinensis)
Reptilia C15orf41 34
  • 82 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia c15orf41 33
  • 69.16 (n)
Str.12368 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.22285 33
(Danio rerio)
Actinopterygii zgc:154061 33
  • 66.18 (n)
C17H15orf41 34
  • 65 (a)
wufb38f07 33
fruit fly
(Drosophila melanogaster)
Insecta CG12713 34 33
  • 47.44 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005605 33
  • 46.69 (n)
Species where no ortholog for C15orf41 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C15orf41 Gene

Gene Tree for C15orf41 (if available)
Gene Tree for C15orf41 (if available)

Paralogs for C15orf41 Gene

No data available for Paralogs for C15orf41 Gene

Variants for C15orf41 Gene

Sequence variations from dbSNP and Humsavar for C15orf41 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs587777100 pathogenic, ANEMIA, CONGENITAL DYSERYTHROPOIETIC, TYPE Ib, Anemia, congenital dyserythropoietic, 1B (CDAN1B) [MIM:615631] 36,697,379(+) T/A coding_sequence_variant, intron_variant, missense_variant, non_coding_transcript_variant
rs587777101 pathogenic, ANEMIA, CONGENITAL DYSERYTHROPOIETIC, TYPE Ib, Anemia, congenital dyserythropoietic, 1B (CDAN1B) [MIM:615631] 36,657,840(+) A/C/G 5_prime_UTR_variant, coding_sequence_variant, missense_variant, non_coding_transcript_variant
rs139444685 likely-benign, not specified 36,692,111(+) C/G intron_variant
rs11073191 benign, not specified 36,645,204(+) G/T intron_variant
rs117638434 benign, not specified 36,697,377(+) C/A/T coding_sequence_variant, intron_variant, missense_variant, non_coding_transcript_variant, synonymous_variant

Structural Variations from Database of Genomic Variants (DGV) for C15orf41 Gene

Variant ID Type Subtype PubMed ID
esv1000709 CNV deletion 20482838
esv1525561 CNV deletion 17803354
esv1643729 CNV insertion 17803354
esv2081110 CNV deletion 18987734
esv2749571 CNV deletion 23290073
esv2749572 CNV deletion 23290073
esv3361212 CNV insertion 20981092
nsv1051232 CNV gain 25217958
nsv1138355 CNV deletion 24896259
nsv1149671 CNV duplication 26484159
nsv569197 CNV loss 21841781
nsv94945 CNV deletion 16902084
nsv976922 CNV duplication 23825009

Variation tolerance for C15orf41 Gene

Residual Variation Intolerance Score: 48.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 13.04; 95.04% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C15orf41 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C15orf41 Gene

Disorders for C15orf41 Gene

MalaCards: The human disease database

(6) MalaCards diseases for C15orf41 Gene - From: HGMD, OMIM, ClinVar, GTR, Orphanet, Swiss-Prot, DISEASES, and GeneCards

- elite association - COSMIC cancer census association via MalaCards


  • Anemia, congenital dyserythropoietic, 1B (CDAN1B) [MIM:615631]: An autosomal recessive blood disorder characterized by morphological abnormalities of erythroblasts, ineffective erythropoiesis, macrocytic anemia and secondary hemochromatosis. It is occasionally associated with bone abnormalities, especially of the hands and feet (acrodysostosis), nail hypoplasia, and scoliosis. Ultrastructural features include internuclear chromatin bridges connecting some nearly completely separated erythroblasts and an abnormal appearance (spongy or Swiss-cheese appearance) of the heterochromatin in a high proportion of the erythroblasts. {ECO:0000269 PubMed:23716552}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Additional Disease Information for C15orf41

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with C15orf41: view

No data available for Genatlas for C15orf41 Gene

Publications for C15orf41 Gene

  1. Homozygous mutations in a predicted endonuclease are a novel cause of congenital dyserythropoietic anemia type I. (PMID: 23716552) Babbs C … Buckle VJ (Haematologica 2013) 2 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. Successful management of transfusion-dependent congenital dyserythropoietic anemia type 1b with interferon alfa-2a. (PMID: 29049846) Rathe M … Fisker N (Pediatric blood & cancer 2018) 3 58
  4. Identification of CDAN1, C15ORF41 and SEC23B mutations in Chinese patients affected by congenital dyserythropoietic anemia. (PMID: 29031773) Wang Y … Nie G (Gene 2018) 3 58
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58

Products for C15orf41 Gene

Sources for C15orf41 Gene

Loading form....