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Aliases for C13orf42 Gene

Aliases for C13orf42 Gene

  • Chromosome 13 Open Reading Frame 42 2 3 5
  • Long Intergenic Non-Protein Coding RNA 371 2 3
  • Long Intergenic Non-Protein Coding RNA 372 3
  • Uncharacterized Protein C13orf42 3
  • LINC00372 3
  • LINC00371 3

External Ids for C13orf42 Gene

Previous HGNC Symbols for C13orf42 Gene

  • LINC00371

Summaries for C13orf42 Gene

GeneCards Summary for C13orf42 Gene

C13orf42 (Chromosome 13 Open Reading Frame 42) is a Protein Coding gene.

Additional gene information for C13orf42 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C13orf42 Gene

Genomics for C13orf42 Gene

GeneHancer (GH) Regulatory Elements for C13orf42 Gene

Promoters and enhancers for C13orf42 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J051174 Enhancer 0.5 Ensembl ENCODE 21.4 +23.8 23848 3 POLR2A GC13P051177 C13orf42 RPL5P31
GH13J051167 Enhancer 0.4 ENCODE 19.5 +31.0 30967 4.1 POLR2A NANOG POU5F1 C13orf42 FAM124A RPL5P31 GC13P051177
GH13J051177 Enhancer 0.2 ENCODE 21.3 +22.2 22192 0.2 GC13P051177 C13orf42 ENSG00000274652
GH13J051158 Enhancer 0.3 ENCODE 4.5 +41.3 41318 1.1 CTCF FAM124A C13orf42 RPL5P31 PIR49595
GH13J051153 Enhancer 0.9 Ensembl ENCODE 0.2 +46.0 45981 1.3 JUN BACH1 CEBPG ZNF384 FOSL1 ZNF316 NFE2 MAFK NFE2L2 NRF1 FAM124A GUCY1B2 RPL5P31 PIR49595 C13orf42
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C13orf42 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C13orf42 Gene

Genomic Locations for C13orf42 Gene
chr13:51,082,119-51,200,252
(GRCh38/hg38)
Size:
118,134 bases
Orientation:
Minus strand
chr13:51,656,984-51,746,524
(GRCh37/hg19)
Size:
89,541 bases
Orientation:
Minus strand

Genomic View for C13orf42 Gene

Genes around C13orf42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C13orf42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C13orf42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C13orf42 Gene

Proteins for C13orf42 Gene

  • Protein details for C13orf42 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GVH6-CM042_HUMAN
    Recommended name:
    Uncharacterized protein C13orf42
    Protein Accession:
    A0A1B0GVH6

    Protein attributes for C13orf42 Gene

    Size:
    325 amino acids
    Molecular mass:
    37385 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C13orf42 Gene

Post-translational modifications for C13orf42 Gene

No Post-translational modifications

Other Protein References for C13orf42 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C13orf42 Gene

Domains & Families for C13orf42 Gene

Gene Families for C13orf42 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C13orf42 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C13orf42: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C13orf42 Gene

Function for C13orf42 Gene

Phenotypes From GWAS Catalog for C13orf42 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C13orf42 Gene

Localization for C13orf42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C13orf42 Gene

Pathways & Interactions for C13orf42 Gene

SuperPathways for C13orf42 Gene

No Data Available

Interacting Proteins for C13orf42 Gene

Gene Ontology (GO) - Biological Process for C13orf42 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C13orf42 Gene

Drugs & Compounds for C13orf42 Gene

No Compound Related Data Available

Transcripts for C13orf42 Gene

mRNA/cDNA for C13orf42 Gene

(2) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C13orf42 Gene

No ASD Table

Relevant External Links for C13orf42 Gene

GeneLoc Exon Structure for
C13orf42
ECgene alternative splicing isoforms for
C13orf42

Expression for C13orf42 Gene

NURSA nuclear receptor signaling pathways regulating expression of C13orf42 Gene:

C13orf42
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C13orf42 Gene

Orthologs for C13orf42 Gene

Evolution for C13orf42 Gene

ENSEMBL:
Gene Tree for C13orf42 (if available)
TreeFam:
Gene Tree for C13orf42 (if available)

No data available for Orthologs for C13orf42 Gene

Paralogs for C13orf42 Gene

No data available for Paralogs for C13orf42 Gene

Variants for C13orf42 Gene

Sequence variations from dbSNP and Humsavar for C13orf42 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000002405 -- 51,142,808(-) A/C intron_variant
rs1000060831 -- 51,101,751(-) T/C intron_variant
rs1000116204 -- 51,108,038(-) G/C intron_variant
rs1000119009 -- 51,163,113(-) G/A intron_variant
rs1000151647 -- 51,119,016(-) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C13orf42 Gene

Variant ID Type Subtype PubMed ID
esv1077361 CNV insertion 17803354
esv3346344 CNV duplication 20981092
nsv507697 OTHER sequence alteration 20534489
nsv518074 CNV loss 19592680
nsv527820 CNV loss 19592680
nsv561618 CNV loss 21841781
nsv832610 CNV gain 17160897
nsv977239 CNV duplication 23825009

Additional Variant Information for C13orf42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C13orf42

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C13orf42 Gene

Disorders for C13orf42 Gene

No disorders were found for C13orf42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C13orf42 Gene

Publications for C13orf42 Gene

  1. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G … Rudan I (PLoS genetics 2013) 3 58
  2. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A … Ross MT (Nature 2004) 4 58

Products for C13orf42 Gene

Sources for C13orf42 Gene

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