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C11orf80 Gene(Protein Coding)

Chromosome 11 Open Reading Frame 80

GCID:
GC11P066744
GIFtS:
36
Genes Participants
UDN Logo

Aliases for C11orf80 Gene

Aliases for C11orf80 Gene

  • Chromosome 11 Open Reading Frame 80 2 3 5
  • Type 2 DNA Topoisomerase VI Subunit B-Like 3 4
  • TOPOVIBL 3 4
  • Type 2 DNA Topoisomerase 6 Subunit B-Like 3
  • TOP6BL 3

External Ids for C11orf80 Gene

Previous GeneCards Identifiers for C11orf80 Gene

  • GC11P066269
  • GC11P066512
  • GC11P062840

Summaries for C11orf80 Gene

GeneCards Summary for C11orf80 Gene

C11orf80 (Chromosome 11 Open Reading Frame 80) is a Protein Coding gene.

UniProtKB/Swiss-Prot for C11orf80 Gene

  • Isoform 3: Component of a topoisomerase 6 complex specifically required for meiotic recombination. Together with SPO11, mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination. The complex promotes relaxation of negative and positive supercoiled DNA and DNA decatenation through cleavage and ligation cycles.

Additional gene information for C11orf80 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf80 Gene

Genomics for C11orf80 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for C11orf80 Gene

Promoters and enhancers for C11orf80 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J066743 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 650.7 +0.3 257 2.9 ARID4B SIN3A ZBTB7B YY1 POLR2B ZNF207 ZNF143 FOS SP3 SP5 SPTBN2 C11orf80 GC11M066742 EIF1AD ENSG00000258297 RBM14 KDM2A RBM4 MRPL11 SART1
GH11J066841 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 669 +98.9 98906 3.6 SMAD1 ARID4B SIN3A DMAP1 YY1 POLR2B E2F8 ZNF207 ZNF143 FOS C11orf80 RCE1 ENSG00000258297 LOC105369352 RBM14 CTSF SF3B2 RBM4 ACTN3 SART1
GH11J066903 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 18.9 +162.2 162182 5.6 FOXA2 ARID4B SIN3A DMAP1 YY1 ZFP91 FOS NFKBIZ RXRA SP5 PC GC11M066909 GC11M066908 C11orf80 RHOD ACTN3 CTSF RIN1 C11orf86 LRFN4
GH11J066880 Enhancer 1.3 Ensembl ENCODE dbSUPER 19.6 +138.1 138095 3.7 PKNOX1 CLOCK FOXA2 ARID4B SIN3A ZNF2 ARID2 ZNF143 FOS REST RHOD C11orf80 ACTN3 CTSF RAD9A RCE1 LRFN4 PC RNU7-23P ENSG00000254510
GH11J066676 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.4 -66.6 -66630 2.8 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 RBM4B GC11P066677 RN7SL12P SPTBN2 C11orf80 LRFN4 PC ZDHHC24 ACTN3 RBM14-RBM4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C11orf80 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C11orf80 gene promoter:
  • Spz1
  • Sox9
  • LCR-F1
  • AP-4
  • GR-alpha
  • GR
  • RSRFC4
  • AP-2alpha
  • AP-2alphaA
  • AP-2beta

Genomic Locations for C11orf80 Gene

Genomic Locations for C11orf80 Gene
chr11:66,744,451-66,843,516
(GRCh38/hg38)
Size:
99,066 bases
Orientation:
Plus strand
chr11:66,511,922-66,610,987
(GRCh37/hg19)
Size:
99,066 bases
Orientation:
Plus strand

Genomic View for C11orf80 Gene

Genes around C11orf80 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C11orf80 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C11orf80 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for C11orf80 Gene

Proteins for C11orf80 Gene

Products:

  1. Antibody
  2. Protein
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  • Protein details for C11orf80 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N6T0-TO6BL_HUMAN
    Recommended name:
    Type 2 DNA topoisomerase 6 subunit B-like
    Protein Accession:
    Q8N6T0
    Secondary Accessions:
    • Q9H677

    Protein attributes for C11orf80 Gene

    Size:
    577 amino acids
    Molecular mass:
    64047 Da
    Quaternary structure:
    • Isoform 3: Heterotetramer of SPO11 and 2 TOP6BL chains. Isoform 3: Interacts with SPO11.
    Miscellaneous:
    • Expansion of a polymorphic CGG repeat within the 5-UTR of this gene may be the cause of folate-sensitive fragile site FRA11A. The expansion is identified in the 15-year-old proband with mental retardation as well as in phenotypically normal members of the family.
    SequenceCaution:
    • Sequence=AAH28240.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB15387.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for C11orf80 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C11orf80 Gene

Protein Expression for C11orf80 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for C11orf80 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C11orf80 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C11orf80 Gene

Domains & Families for C11orf80 Gene

Gene Families for C11orf80 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for C11orf80 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C11orf80 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N6T0

UniProtKB/Swiss-Prot:

TO6BL_HUMAN :
  • Isoform 3: Despite a weak sequence similarity, retains most of the structural features of the ancestral archaeal Top6B subunit (AC O05207), including the transducer domain that interacts with the SPO11 subunit and the ATP-binding fold, also named GHKL fold.
  • Belongs to the TOP6B-like family.
Domain:
  • Isoform 3: Despite a weak sequence similarity, retains most of the structural features of the ancestral archaeal Top6B subunit (AC O05207), including the transducer domain that interacts with the SPO11 subunit and the ATP-binding fold, also named GHKL fold.
Family:
  • Belongs to the TOP6B-like family.
genes like me logo Genes that share domains with C11orf80: view

Function for C11orf80 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
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  6. Cell Line

Molecular function for C11orf80 Gene

UniProtKB/Swiss-Prot Function:
Isoform 3: Component of a topoisomerase 6 complex specifically required for meiotic recombination. Together with SPO11, mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination. The complex promotes relaxation of negative and positive supercoiled DNA and DNA decatenation through cleavage and ligation cycles.

Phenotypes From GWAS Catalog for C11orf80 Gene

genes like me logo Genes that share phenotypes with C11orf80: view

Animal Model Products

miRNA for C11orf80 Gene

miRTarBase miRNAs that target C11orf80

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C11orf80 Gene

Localization for C11orf80 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C11orf80 Gene

Chromosome. Note=Localizes to meiotic chromosomes. {ECO:0000250 UniProtKB:J3QMY9}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C11orf80 gene
Compartment Confidence
cytoskeleton 3
nucleus 2
plasma membrane 1
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1
cytosol 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Centrosome (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for C11orf80 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005694 chromosome IEA --
genes like me logo Genes that share ontologies with C11orf80: view

Pathways & Interactions for C11orf80 Gene

SuperPathways for C11orf80 Gene

PathCards logo More details on SuperPathways for C11orf80
No Data Available

Interacting Proteins for C11orf80 Gene

Gene Ontology (GO) - Biological Process for C11orf80 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007131 reciprocal meiotic recombination ISS --
GO:0042138 meiotic DNA double-strand break formation IEA,ISS --
GO:0051321 meiotic cell cycle IEA --
genes like me logo Genes that share ontologies with C11orf80: view

No data available for Pathways by source and SIGNOR curated interactions for C11orf80 Gene

Drugs & Compounds for C11orf80 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for C11orf80 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for C11orf80 Gene

(2) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(222) Selected AceView cDNA sequences:
(19) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C11orf80 Gene

Chromosome 11 open reading frame 80:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf80 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b
SP1: - - -
SP2: - - - - -
SP3: - - -
SP4:
SP5:
SP6: -
SP7: - - -
SP8:

Relevant External Links for C11orf80 Gene

GeneLoc Exon Structure for
C11orf80
ECgene alternative splicing isoforms for
C11orf80

Expression for C11orf80 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C11orf80 Gene

mRNA expression in normal human tissues for C11orf80 Gene
mRNA expression by BioGPS for C11orf80 GenemRNA expression by GTEx for C11orf80 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for C11orf80 Gene

This gene is overexpressed in Tlymphocyte (46.7) and Heart (22.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C11orf80 Gene



Protein tissue co-expression partners for C11orf80 Gene

NURSA nuclear receptor signaling pathways regulating expression of C11orf80 Gene:

C11orf80

SOURCE GeneReport for Unigene cluster for C11orf80 Gene:

Hs.292088

mRNA Expression by UniProt/SwissProt for C11orf80 Gene:

Q8N6T0-TO6BL_HUMAN
Tissue specificity: Detected in lung, spleen,colon and in skeletal muscle.

Evidence on tissue expression from TISSUES for C11orf80 Gene

  • Nervous system(4.3)
genes like me logo Genes that share expression patterns with C11orf80: view

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for C11orf80 Gene

Orthologs for C11orf80 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C11orf80 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia C11H11orf80 33
  • 99.02 (n)
C11orf80 34
  • 99 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia C29H11orf80 33
  • 82.45 (n)
C11orf80 34
  • 72 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia C18H11orf80 33
  • 80.87 (n)
C11orf80 34
  • 75 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm960 16 34 33
  • 74.64 (n)
platypus
(Ornithorhynchus anatinus)
 Mammalia C11orf80 34
  • 39 (a)
 OneToOne
zebrafish
(Danio rerio)
 Actinopterygii zgc:195212 33
  • 40.67 (n)
C14H11orf80 34
  • 19 (a)
 OneToOne
Species where no ortholog for C11orf80 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C11orf80 Gene

ENSEMBL:
Gene Tree for C11orf80 (if available)
TreeFam:
Gene Tree for C11orf80 (if available)

Paralogs for C11orf80 Gene

(42) SIMAP similar genes for C11orf80 Gene using alignment to 13 proteins:

  • CK080_HUMAN
  • B4DXL1_HUMAN
  • C9JZP8_HUMAN
  • E9PIE7_HUMAN
  • E9PJS1_HUMAN
  • E9PKM2_HUMAN
  • E9PMI8_HUMAN
  • E9PMU2_HUMAN
  • E9PNG9_HUMAN
  • H0YD22_HUMAN
  • H0YD55_HUMAN
  • H0YDL3_HUMAN
  • H0YE21_HUMAN
genes like me logo Genes that share paralogs with C11orf80: view

No data available for Paralogs for C11orf80 Gene

Variants for C11orf80 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for C11orf80 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000004593 -- 66,828,059(+) A/G intron_variant
rs1000079174 -- 66,765,973(+) A/T intron_variant
rs1000126271 -- 66,752,442(+) C/G intron_variant
rs1000154215 -- 66,758,515(+) C/T intron_variant
rs1000154934 -- 66,804,631(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C11orf80 Gene

Variant ID Type Subtype PubMed ID
nsv951020 CNV deletion 24416366
nsv555226 CNV gain 21841781
nsv555225 CNV loss 21841781
nsv516087 CNV gain 19592680
nsv508638 CNV deletion 20534489
nsv468602 CNV loss 19166990
nsv364 CNV insertion 18451855
nsv1134146 CNV deletion 24896259
esv3626698 CNV loss 21293372
esv3547920 CNV deletion 23714750
esv2744642 CNV deletion 23290073
esv2744640 CNV deletion 23290073
esv2665794 CNV deletion 23128226

Variation tolerance for C11orf80 Gene

Residual Variation Intolerance Score: 34.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.35; 41.79% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C11orf80 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C11orf80

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C11orf80 Gene

Disorders for C11orf80 Gene

Additional Disease Information for C11orf80

Genetic Association Database
(GAD)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for C11orf80 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C11orf80 Gene

Publications for C11orf80 Gene

  1. The TopoVIB-Like protein family is required for meiotic DNA double-strand break formation. (PMID: 26917764) Robert T … de Massy B (Science (New York, N.Y.) 2016) 2 3 4 58
  2. The molecular basis of the folate-sensitive fragile site FRA11A at 11q13. (PMID: 18160775) Debacker K … Kooy F (Cytogenetic and genome research 2007) 2 3 4 58
  3. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4. (PMID: 21926972) Psychiatric GWAS Consortium Bipolar Disorder Working Group (Nature genetics 2011) 3 44 58
  4. Leveraging electronic health records to study pleiotropic effects on bipolar disorder and medical comorbidities. (PMID: 27529678) Prieto ML … Biernacka JM (Translational psychiatry 2016) 3 58
  5. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor TD … Sakaki Y (Nature 2006) 4 58

Products for C11orf80 Gene

Sources for C11orf80 Gene

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