Aliases for C11orf71 Gene
Aliases for C11orf71 Gene
External Ids for C11orf71 Gene
- HGNC: 25937
- Entrez Gene: 54494
- Ensembl: ENSG00000180425
- UniProtKB: Q6IPW1
Previous GeneCards Identifiers for C11orf71 Gene
- GC11M113767
- GC11M114262
- GC11M110190
Summaries for C11orf71 Gene
GeneCards Summary for C11orf71 Gene
C11orf71 (Chromosome 11 Open Reading Frame 71) is a Protein Coding gene.
Additional gene information for C11orf71 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf71 Gene
Genomics for C11orf71 Gene
GeneHancer (GH) Regulatory Elements for C11orf71 Gene
Promoters and enhancers for C11orf71 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around C11orf71 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for C11orf71 Gene
Genomic Locations for C11orf71 Gene
- chr11:114,391,443-114,400,550
- (GRCh38/hg38)
- Size:
- 9,108 bases
- Orientation:
- Minus strand
- chr11:114,262,165-114,271,139
- (GRCh37/hg19)
Genomic View for C11orf71 Gene
Genes around C11orf71 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q23.2 by Ensembl
- 11q23.2 by Entrez Gene
- 11q23.2 by HGNC
C11orf71 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for C11orf71 Gene
Proteins for C11orf71 Gene
-
Protein details for C11orf71 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q6IPW1-CK071_HUMAN
- Recommended name:
- Uncharacterized protein C11orf71
- Protein Accession:
- Q6IPW1
- Q6IAD3
- Q9NXX1
Protein attributes for C11orf71 Gene
- Size:
- 123 amino acids
- Molecular mass:
- 13249 Da
- Quaternary structure:
- No Data Available
Protein Expression for C11orf71 Gene
Post-translational modifications for C11orf71 Gene
Other Protein References for C11orf71 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for C11orf71
- Invitrogen Antibodies for C11orf71
- Search GeneTex for Antibodies for C11orf71
Protein Products
-
OriGene Purified Proteins for C11orf71
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- Origene Custom Protein Services for C11orf71
- Novus Biologicals proteins for C11orf71
- Search GeneTex for Proteins for C11orf71
Assay Products
No data available for DME Specific Peptides for C11orf71 Gene
Domains & Families for C11orf71 Gene
Gene Families for C11orf71 Gene
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Graphical View of Domain Structure for InterPro Entry
No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C11orf71 Gene
Function for C11orf71 Gene
Phenotypes From GWAS Catalog for C11orf71 Gene
Phenotypes for C11orf71 Gene
- GenomeRNAi human phenotypes for C11orf71:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for C11orf71
-
-
ViGene Biosciences lentiviral particle packaged cDNA for C11orf71 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C11orf71 gene
- Search ViGene Biosciences for C11orf71
CRISPR Products
-
OriGene CRISPR knockouts for C11orf71
- genomics-online: gRNA clones - Search results for 53 available C11ORF71 gene related products
- Overview of 53 available C11ORF71 gene related products
- Applied Biological Materials CRISPR for C11orf71
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for C11orf71
- GenScript: Design CRISPR guide RNA sequences for C11orf71
miRNA Products
- Search ViGene Biosciences for C11orf71
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for C11orf71
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- genomics-online: shRNA clones - Search results for 53 available C11ORF71 gene related products
- Overview of 53 available C11ORF71 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for C11orf71 gene
Clone Products
- VectorBuilder custom plasmid, inducible vectors for C11orf71
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-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for C11orf71
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for C11orf71
-
ViGene Biosciences adenoviral particle packaged cDNA for C11orf71 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for C11orf71 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C11orf71 gene
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C11orf71 Gene
Localization for C11orf71 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 2 |
| cytosol | 2 |
| extracellular | 1 |
| mitochondrion | 1 |
- Nucleoplasm (3)
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C11orf71 Gene
Pathways & Interactions for C11orf71 Gene
No Data Available
Interacting Proteins for C11orf71 Gene
No data available for Pathways by source and SIGNOR curated interactions for C11orf71 Gene
Transcripts for C11orf71 Gene
mRNA/cDNA for C11orf71 Gene
- (2) REFSEQ mRNAs :
- (4) Additional mRNA sequences :
- (111) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for C11orf71 Gene
- Chromosome 11 open reading frame 71:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for C11orf71
- genomics-online: gRNA clones - Search results for 53 available C11ORF71 gene related products
- Overview of 53 available C11ORF71 gene related products
- Applied Biological Materials CRISPR for C11orf71
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for C11orf71
- GenScript: Design CRISPR guide RNA sequences for C11orf71
miRNA Products
- Search ViGene Biosciences for C11orf71
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for C11orf71
- Browse OriGene Inhibitory RNA Products For C11orf71
- genomics-online: shRNA clones - Search results for 53 available C11ORF71 gene related products
- Overview of 53 available C11ORF71 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for C11orf71 gene
Clone Products
- VectorBuilder custom plasmid, inducible vectors for C11orf71
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C11orf71
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for C11orf71
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for C11orf71 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Epithelial Cells
- Fetal Matrix Cells Hair Follicle
-
Hair (Integumentary System)
- Fetal Matrix Cells Hair Follicle
-
Testis (Reproductive System)
-
Prostate (Endocrine System)
This gene is overexpressed in Heart (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C11orf71 Gene
NURSA nuclear receptor signaling pathways regulating expression of C11orf71 Gene:
C11orf71SOURCE GeneReport for Unigene cluster for C11orf71 Gene:
Hs.715083Primer Products
-
OriGene qPCR primer pairs and template standards for C11orf71
-
OriGene qPCR primer pairs for C11orf71
- genomics-online: primer clones - Search results for 53 available C11ORF71 gene related products
- Overview of 53 available C11ORF71 gene related products
Gene Expression Assay Products
No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C11orf71 Gene
Orthologs for C11orf71 Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | C11H11orf71 33 |
|
||
| C11orf71 34 |
|
OneToOne | |||
| cow (Bos Taurus) |
Mammalia | C15H11orf71 33 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | RGD1563941 33 |
|
||
| mouse (Mus musculus) |
Mammalia | Gm5617 33 16 34 |
|
||
| dog (Canis familiaris) |
Mammalia | C11orf71 34 |
|
OneToOne |
- Species where no ortholog for C11orf71 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for C11orf71 Gene
No data available for Paralogs for C11orf71 Gene
Variants for C11orf71 Gene
| SNP ID | Clin | Chr 11 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000122162 | -- | 114,400,453(-) | G/A | 5_prime_UTR_variant | |
| rs1000142686 | -- | 114,399,283(-) | G/A | 3_prime_UTR_variant, intron_variant | |
| rs1000369583 | -- | 114,392,892(-) | C/T | genic_downstream_transcript_variant, intron_variant | |
| rs1000794307 | -- | 114,401,256(-) | G/A | upstream_transcript_variant | |
| rs1001064391 | -- | 114,393,629(-) | T/C | genic_downstream_transcript_variant, intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3548365 | CNV | deletion | 23714750 |
Residual Variation Intolerance Score:
75.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.38;
27.25% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for C11orf71 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- C11orf71
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C11orf71 Gene
Disorders for C11orf71 Gene
Additional Disease Information for C11orf71
No disorders were found for C11orf71 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C11orf71 Gene
Publications for C11orf71 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
- Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. (PMID: 21804549) Torgerson DG … Nicolae DL (Nature genetics 2011) 3 58
- Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 58
Products for C11orf71 Gene
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- OriGene Purified Proteins for C11orf71
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- OriGene qPCR primer pairs and template standards for C11orf71
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- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for C11orf71
- VectorBuilder custom plasmid, inducible vectors for C11orf71
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C11orf71
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for C11orf71
- Search GeneTex for Proteins for C11orf71
- ViGene Biosciences adenoviral particle packaged cDNA for C11orf71 gene
- ViGene Biosciences lentiviral particle packaged cDNA for C11orf71 gene
- ViGene Biosciences ready-to-package AAV shRNAs for C11orf71 gene
- Search ViGene Biosciences for C11orf71
- Horizon Cell Lines for C11orf71
- genomics-online: cdna clones - Search results for 53 available C11ORF71 gene related products
- Overview of 53 available C11ORF71 gene related products
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- genomics-online: primer clones - Search results for 53 available C11ORF71 gene related products
- Overview of 53 available C11ORF71 gene related products
- genomics-online: shRNA clones - Search results for 53 available C11ORF71 gene related products
- Overview of 53 available C11ORF71 gene related products
Sources for C11orf71 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems