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Aliases for C10orf88 Gene

Aliases for C10orf88 Gene

  • Chromosome 10 Open Reading Frame 88 2 3 5
  • Uncharacterized Protein C10orf88 3

External Ids for C10orf88 Gene

Previous GeneCards Identifiers for C10orf88 Gene

  • GC10M124230
  • GC10M124681
  • GC10M118307

Summaries for C10orf88 Gene

GeneCards Summary for C10orf88 Gene

C10orf88 (Chromosome 10 Open Reading Frame 88) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include identical protein binding.

Additional gene information for C10orf88 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf88 Gene

Genomics for C10orf88 Gene

GeneHancer (GH) Regulatory Elements for C10orf88 Gene

Promoters and enhancers for C10orf88 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J122953 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 665 +0.3 336 1.7 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC C10orf88 PSTK BUB3 IKZF5 FAM24A GC10M122775
GH10J122849 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 20.8 +100.9 100856 7.7 MEIS2 ZNF768 JUN INSM2 ZIC2 ZNF335 ZFHX2 ZNF316 POLR2A SCRT2 FAM24B CUZD1 C10orf88 LOC399815 IKZF5 ACADSB FAM24B-CUZD1 GC10M122775
GH10J122860 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.6 +91.2 91222 5.1 HDAC1 PKNOX1 FOXA2 SIN3A THRB RARA ZEB1 TCF12 ZNF366 RCOR1 C10orf88 ACADSB CUZD1 FAM24B FAM24B-CUZD1 LOC399815 GC10M122775
GH10J122284 Enhancer 0.8 ENCODE dbSUPER 15.8 +667.7 667723 4.5 ZBTB6 BACH1 ZIC2 ZKSCAN1 RAD51 JUND GLIS2 ZNF23 POLR2A PATZ1 BTBD16 C10orf88 HTRA1 GC10P122346
GH10J122331 Enhancer 1 ENCODE dbSUPER 10.6 +622.8 622773 0.8 FOXA2 ARID4B DMAP1 RAD21 DNMT3B ZNF48 RARA SLC30A9 ZNF614 CREM IKZF5 BUB3 FAM24B C10orf88 ARMS2 GC10P122346 BTBD16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C10orf88 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C10orf88 gene promoter:

Genomic Locations for C10orf88 Gene

Genomic Locations for C10orf88 Gene
chr10:122,930,903-122,954,403
(GRCh38/hg38)
Size:
23,501 bases
Orientation:
Minus strand
chr10:124,690,419-124,713,919
(GRCh37/hg19)

Genomic View for C10orf88 Gene

Genes around C10orf88 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C10orf88 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf88 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf88 Gene

Proteins for C10orf88 Gene

  • Protein details for C10orf88 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H8K7-CJ088_HUMAN
    Recommended name:
    Uncharacterized protein C10orf88
    Protein Accession:
    Q9H8K7
    Secondary Accessions:
    • Q0P6C6
    • Q8N597

    Protein attributes for C10orf88 Gene

    Size:
    445 amino acids
    Molecular mass:
    49249 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C10orf88 Gene

Post-translational modifications for C10orf88 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C10orf88 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf88 Gene

Domains & Families for C10orf88 Gene

Gene Families for C10orf88 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C10orf88 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf88: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf88 Gene

Function for C10orf88 Gene

Phenotypes From GWAS Catalog for C10orf88 Gene

Gene Ontology (GO) - Molecular Function for C10orf88 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042802 identical protein binding IEA --
genes like me logo Genes that share ontologies with C10orf88: view
genes like me logo Genes that share phenotypes with C10orf88: view

Animal Model Products

miRNA for C10orf88 Gene

miRTarBase miRNAs that target C10orf88

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C10orf88 Gene

Localization for C10orf88 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C10orf88 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 1
mitochondrion 1
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C10orf88 Gene

Pathways & Interactions for C10orf88 Gene

SuperPathways for C10orf88 Gene

No Data Available

Interacting Proteins for C10orf88 Gene

Gene Ontology (GO) - Biological Process for C10orf88 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C10orf88 Gene

Drugs & Compounds for C10orf88 Gene

No Compound Related Data Available

Transcripts for C10orf88 Gene

mRNA/cDNA for C10orf88 Gene

(72) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C10orf88 Gene

Chromosome 10 open reading frame 88:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf88 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8
SP1: -
SP2: -
SP3: - -
SP4: -

Relevant External Links for C10orf88 Gene

GeneLoc Exon Structure for
C10orf88
ECgene alternative splicing isoforms for
C10orf88

Expression for C10orf88 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C10orf88 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for C10orf88 Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C10orf88 Gene



Protein tissue co-expression partners for C10orf88 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of C10orf88 Gene:

C10orf88

SOURCE GeneReport for Unigene cluster for C10orf88 Gene:

Hs.501286
genes like me logo Genes that share expression patterns with C10orf88: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C10orf88 Gene

Orthologs for C10orf88 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C10orf88 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10H10orf88 33
  • 99.1 (n)
C10orf88 34
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C26H10orf88 33
  • 82.16 (n)
-- 34
  • 75 (a)
OneToMany
-- 34
  • 74 (a)
OneToMany
dog
(Canis familiaris)
Mammalia C28H10orf88 33
  • 80.22 (n)
-- 34
  • 73 (a)
OneToMany
-- 34
  • 72 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia RGD1305014 33
  • 79.88 (n)
mouse
(Mus musculus)
Mammalia 2310057M21Rik 16 34 33
  • 78.9 (n)
oppossum
(Monodelphis domestica)
Mammalia C10orf88 34
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C10orf88 34
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves C6H10ORF88 33
  • 59.81 (n)
C10orf88 34
  • 45 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C10orf88 34
  • 40 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100485309 33
  • 48.94 (n)
zebrafish
(Danio rerio)
Actinopterygii si:rp71-19m20.1 33
  • 48.16 (n)
C12H10orf88 34
  • 30 (a)
OneToOne
Species where no ortholog for C10orf88 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C10orf88 Gene

ENSEMBL:
Gene Tree for C10orf88 (if available)
TreeFam:
Gene Tree for C10orf88 (if available)

Paralogs for C10orf88 Gene

Pseudogenes.org Pseudogenes for C10orf88 Gene

genes like me logo Genes that share paralogs with C10orf88: view

No data available for Paralogs for C10orf88 Gene

Variants for C10orf88 Gene

Sequence variations from dbSNP and Humsavar for C10orf88 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000088044 -- 122,955,591(-) C/A upstream_transcript_variant
rs1000152254 -- 122,946,476(-) G/A intron_variant
rs1000205165 -- 122,946,135(-) A/G intron_variant
rs1000515615 -- 122,932,112(-) C/T 3_prime_UTR_variant, downstream_transcript_variant, genic_downstream_transcript_variant
rs1000530828 -- 122,947,785(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C10orf88 Gene

Variant ID Type Subtype PubMed ID
esv6242 OTHER inversion 19470904
nsv832010 CNV gain 17160897

Variation tolerance for C10orf88 Gene

Residual Variation Intolerance Score: 84.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.00; 36.84% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C10orf88 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C10orf88

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C10orf88 Gene

Disorders for C10orf88 Gene

Additional Disease Information for C10orf88

No disorders were found for C10orf88 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf88 Gene

Publications for C10orf88 Gene

  1. Association of vitamin D-related gene polymorphisms with manifestation of vitamin D deficiency in children. (PMID: 22785457) Kitanaka S … Igarashi T (Endocrine journal 2012) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 58

Products for C10orf88 Gene

Sources for C10orf88 Gene

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