Aliases for C10orf71-AS1 Gene

Subcategory (RNA class) for C10orf71-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for C10orf71-AS1 Gene

  • C10orf71 Antisense RNA 1 2 3 5
  • C10orf71-AS1 2 5 165
  • NONHSAG005864.2 91
  • HSALNG0077871 164

External Ids for C10orf71-AS1 Gene

Previous GeneCards Identifiers for C10orf71-AS1 Gene

  • GC10M050506

Summaries for C10orf71-AS1 Gene

GeneCards Summary for C10orf71-AS1 Gene

C10orf71-AS1 (C10orf71 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for C10orf71-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C10orf71-AS1 Gene

Genomics for C10orf71-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C10orf71-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C10orf71-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for C10orf71-AS1 Gene

Genomic Locations for C10orf71-AS1 Gene
chr10:49,294,341-49,299,019
(GRCh38/hg38)
Size:
4,679 bases
Orientation:
Minus strand
chr10:50,504,157-50,507,063
(GRCh37/hg19)
Size:
2,907 bases
Orientation:
Minus strand

Genomic View for C10orf71-AS1 Gene

Genes around C10orf71-AS1 on UCSC Golden Path with GeneCards custom track
C10orf71-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
C10orf71-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf71-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf71-AS1 Gene

Proteins for C10orf71-AS1 Gene

Post-translational modifications for C10orf71-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C10orf71-AS1 Gene

Domains & Families for C10orf71-AS1 Gene

Gene Families for C10orf71-AS1 Gene

genes like me logo Genes that share domains with C10orf71-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C10orf71-AS1 Gene

Function for C10orf71-AS1 Gene

Phenotypes From GWAS Catalog for C10orf71-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf71-AS1 Gene

Localization for C10orf71-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C10orf71-AS1 Gene

Pathways & Interactions for C10orf71-AS1 Gene

PathCards logo

SuperPathways for C10orf71-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C10orf71-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C10orf71-AS1 Gene

Drugs & Compounds for C10orf71-AS1 Gene

No Compound Related Data Available

Transcripts for C10orf71-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for C10orf71-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B248_9606 lncRNA 695 3

HGNC: 45007,

RefSeq: NR_108038,

LNCipedia: C10orf71-AS1:4,

URS0000492660_9606 lncRNA 753 2

Ensembl: ENST00000437677 (view in UCSC) ,

LNCipedia: C10orf71-AS1:6,

URS0000285586_9606 lncRNA 534 2

Ensembl: ENST00000442700 (view in UCSC) ,

LNCipedia: C10orf71-AS1:1,

URS00008BDD28_9606 lncRNA 2195 3

LncBook: HSALNT0162519,

LNCipedia: C10orf71-AS1:2,

NONCODE: NONHSAT013300.2,

URS0000D5D4B4_9606 lncRNA 2513 2

LncBook: HSALNT0162518,

LNCipedia: C10orf71-AS1:7,

C10orf71-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for C10orf71-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf71-AS1 Gene

No ASD Table

Relevant External Links for C10orf71-AS1 Gene

GeneLoc Exon Structure for
C10orf71-AS1

Expression for C10orf71-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C10orf71-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C10orf71-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x24.2), Heart - Left Ventricle (x17.4), and Heart - Atrial Appendage (x9.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C10orf71-AS1

SOURCE GeneReport for Unigene cluster for C10orf71-AS1 Gene:

Hs.562293
genes like me logo Genes that share expression patterns with C10orf71-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C10orf71-AS1 Gene

Orthologs for C10orf71-AS1 Gene

Evolution for C10orf71-AS1 Gene

ENSEMBL:
Gene Tree for C10orf71-AS1 (if available)
TreeFam:
Gene Tree for C10orf71-AS1 (if available)

No data available for Orthologs for C10orf71-AS1 Gene

Paralogs for C10orf71-AS1 Gene

No data available for Paralogs for C10orf71-AS1 Gene

Variants for C10orf71-AS1 Gene

Additional dbSNP identifiers (rs#s) for C10orf71-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for C10orf71-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1042677 CNV loss 25217958

Additional Variant Information for C10orf71-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C10orf71-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for C10orf71-AS1 Gene

Disorders for C10orf71-AS1 Gene

No disorders were found for C10orf71-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf71-AS1 Gene

Publications for C10orf71-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for C10orf71-AS1 Gene

Products for C10orf71-AS1 Gene

Sources for C10orf71-AS1 Gene