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Aliases for C10orf71-AS1 Gene

Subcategory (RNA class) for C10orf71-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C10orf71-AS1 Gene

  • C10orf71 Antisense RNA 1 2 3 5

External Ids for C10orf71-AS1 Gene

Previous GeneCards Identifiers for C10orf71-AS1 Gene

  • GC10M050506

Summaries for C10orf71-AS1 Gene

GeneCards Summary for C10orf71-AS1 Gene

C10orf71-AS1 (C10orf71 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C10orf71-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf71-AS1 Gene

Genomics for C10orf71-AS1 Gene

GeneHancer (GH) Regulatory Elements for C10orf71-AS1 Gene

Promoters and enhancers for C10orf71-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I049296 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 0.0 -14 6 HDGF PKNOX1 SMAD1 ARNT FEZF1 POLR2B ZNF766 REST ZNF592 MEF2D C10orf71 C10orf71-AS1 LINC00843 AGAP6 WASHC2A RNA5SP317 DRGX ERCC6 GC10M049333
GH10I049270 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 16.5 +26.6 26625 3.1 EBF1 NR2F2 C10orf71 C10orf71-AS1 C10orf128 DRGX GC10P049274
GH10I049321 Enhancer 0.4 dbSUPER 17 -24.4 -24368 2.9 CTCF RAD21 C10orf71-AS1 C10orf71 C10orf128 DRGX GC10M049333
GH10I049023 Enhancer 0.7 Ensembl ENCODE 9.3 +274.4 274394 2.4 TFAP4 RXRA NR2F1 NR2F6 HNF4A VSTM4 ENSG00000226576 FAM170B-AS1 C10orf71 C10orf71-AS1 LOC105378298 GC10M049015 PIR36323
GH10I049205 Enhancer 0.6 VISTA UCNEbase 10.5 +93.2 93186 0.9 DRGX C10orf71 C10orf71-AS1 C10orf128 GC10P049274
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C10orf71-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C10orf71-AS1 Gene

Genomic Locations for C10orf71-AS1 Gene
chr10:49,296,112-49,299,018
(GRCh38/hg38)
Size:
2,907 bases
Orientation:
Minus strand
chr10:50,504,157-50,507,063
(GRCh37/hg19)

Genomic View for C10orf71-AS1 Gene

Genes around C10orf71-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C10orf71-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf71-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf71-AS1 Gene

Proteins for C10orf71-AS1 Gene

Post-translational modifications for C10orf71-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C10orf71-AS1 Gene

Domains & Families for C10orf71-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf71-AS1 Gene

Function for C10orf71-AS1 Gene

Phenotypes From GWAS Catalog for C10orf71-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf71-AS1 Gene

Localization for C10orf71-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C10orf71-AS1 Gene

Pathways & Interactions for C10orf71-AS1 Gene

SuperPathways for C10orf71-AS1 Gene

No Data Available

Interacting Proteins for C10orf71-AS1 Gene

Gene Ontology (GO) - Biological Process for C10orf71-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C10orf71-AS1 Gene

Drugs & Compounds for C10orf71-AS1 Gene

No Compound Related Data Available

Transcripts for C10orf71-AS1 Gene

mRNA/cDNA for C10orf71-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C10orf71-AS1 Gene

C10orf71 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf71-AS1 Gene

No ASD Table

Relevant External Links for C10orf71-AS1 Gene

GeneLoc Exon Structure for
C10orf71-AS1
ECgene alternative splicing isoforms for
C10orf71-AS1

Expression for C10orf71-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C10orf71-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C10orf71-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x24.2), Heart - Left Ventricle (x17.4), and Heart - Atrial Appendage (x9.3).

SOURCE GeneReport for Unigene cluster for C10orf71-AS1 Gene:

Hs.562293
genes like me logo Genes that share expression patterns with C10orf71-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C10orf71-AS1 Gene

Orthologs for C10orf71-AS1 Gene

Evolution for C10orf71-AS1 Gene

ENSEMBL:
Gene Tree for C10orf71-AS1 (if available)
TreeFam:
Gene Tree for C10orf71-AS1 (if available)

No data available for Orthologs for C10orf71-AS1 Gene

Paralogs for C10orf71-AS1 Gene

No data available for Paralogs for C10orf71-AS1 Gene

Variants for C10orf71-AS1 Gene

Sequence variations from dbSNP and Humsavar for C10orf71-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000552214 -- 49,296,322(-) G/C non_coding_transcript_variant
rs1001441046 -- 49,297,692(-) T/A intron_variant
rs1002579456 -- 49,299,875(-) G/A upstream_transcript_variant
rs1003146887 -- 49,299,245(-) G/T upstream_transcript_variant
rs1003447901 -- 49,300,260(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for C10orf71-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1042677 CNV loss 25217958

Additional Variant Information for C10orf71-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C10orf71-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C10orf71-AS1 Gene

Disorders for C10orf71-AS1 Gene

Additional Disease Information for C10orf71-AS1

No disorders were found for C10orf71-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf71-AS1 Gene

Publications for C10orf71-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for C10orf71-AS1 Gene

Sources for C10orf71-AS1 Gene

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