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Aliases for C10orf143 Gene

Aliases for C10orf143 Gene

  • Chromosome 10 Open Reading Frame 143 2 3 5
  • Long Intergenic Non-Protein Coding RNA 959 2 3
  • Uncharacterized Protein C10orf143 3
  • LINC00959 3

External Ids for C10orf143 Gene

Previous HGNC Symbols for C10orf143 Gene

  • LINC00959

Summaries for C10orf143 Gene

GeneCards Summary for C10orf143 Gene

C10orf143 (Chromosome 10 Open Reading Frame 143) is a Protein Coding gene. Diseases associated with C10orf143 include Colorectal Cancer.

Additional gene information for C10orf143 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf143 Gene

Genomics for C10orf143 Gene

GeneHancer (GH) Regulatory Elements for C10orf143 Gene

Promoters and enhancers for C10orf143 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J130108 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 661.9 +0.2 175 3.5 HDGF PKNOX1 CLOCK ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 C10orf143 GLRX3 LOC102724883 CTAGE7P
GH10J130127 Enhancer 1 Ensembl ENCODE 8.2 -17.2 -17219 0.9 ARID4B SIN3A BATF IRF4 RAD21 ZSCAN5C ZNF143 BCLAF1 IKZF2 RUNX3 C10orf143 PIR55889 LOC105378561 LOC102724883
GH10J130105 Enhancer 0.3 ENCODE 0.7 +4.9 4885 0.2 PRDM10 CTAGE7P ENSG00000277218 PPIAP32 GLRX3 C10orf143
GH10J130020 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.2 +88.7 88735 3.5 MAX FOS MYC PIR37775 EBF3 C10orf143
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C10orf143 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C10orf143 Gene

Genomic Locations for C10orf143 Gene
chr10:130,020,025-130,110,817
(GRCh38/hg38)
Size:
90,793 bases
Orientation:
Minus strand
chr10:131,862,160-131,909,081
(GRCh37/hg19)
Size:
46,922 bases
Orientation:
Minus strand

Genomic View for C10orf143 Gene

Genes around C10orf143 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C10orf143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf143 Gene

Proteins for C10orf143 Gene

  • Protein details for C10orf143 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GUT2-CJ143_HUMAN
    Recommended name:
    Uncharacterized protein C10orf143
    Protein Accession:
    A0A1B0GUT2

    Protein attributes for C10orf143 Gene

    Size:
    108 amino acids
    Molecular mass:
    11738 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C10orf143 Gene

Post-translational modifications for C10orf143 Gene

No Post-translational modifications

Other Protein References for C10orf143 Gene

No data available for DME Specific Peptides for C10orf143 Gene

Domains & Families for C10orf143 Gene

Gene Families for C10orf143 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C10orf143 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf143: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf143 Gene

Function for C10orf143 Gene

Phenotypes From GWAS Catalog for C10orf143 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf143 Gene

Localization for C10orf143 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C10orf143 Gene

Pathways & Interactions for C10orf143 Gene

SuperPathways for C10orf143 Gene

No Data Available

Interacting Proteins for C10orf143 Gene

Gene Ontology (GO) - Biological Process for C10orf143 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C10orf143 Gene

Drugs & Compounds for C10orf143 Gene

No Compound Related Data Available

Transcripts for C10orf143 Gene

mRNA/cDNA for C10orf143 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf143 Gene

No ASD Table

Relevant External Links for C10orf143 Gene

GeneLoc Exon Structure for
C10orf143
ECgene alternative splicing isoforms for
C10orf143

Expression for C10orf143 Gene

NURSA nuclear receptor signaling pathways regulating expression of C10orf143 Gene:

C10orf143
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C10orf143 Gene

Orthologs for C10orf143 Gene

Evolution for C10orf143 Gene

ENSEMBL:
Gene Tree for C10orf143 (if available)
TreeFam:
Gene Tree for C10orf143 (if available)

No data available for Orthologs for C10orf143 Gene

Paralogs for C10orf143 Gene

No data available for Paralogs for C10orf143 Gene

Variants for C10orf143 Gene

Sequence variations from dbSNP and Humsavar for C10orf143 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000022863 -- 130,098,416(-) T/C intron_variant
rs1000057440 -- 130,092,862(-) A/G intron_variant
rs1000127734 -- 130,087,029(-) A/T intron_variant
rs1000212288 -- 130,088,077(-) G/A intron_variant
rs1000224646 -- 130,087,291(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C10orf143 Gene

Variant ID Type Subtype PubMed ID
esv1284081 CNV insertion 17803354
esv1382398 CNV insertion 17803354
esv2662857 CNV deletion 23128226
esv3392079 CNV duplication 20981092
esv3624926 CNV loss 21293372
nsv1039523 CNV loss 25217958
nsv1048253 CNV gain 25217958
nsv1113346 CNV deletion 24896259
nsv1127150 CNV deletion 24896259
nsv1127151 CNV deletion 24896259
nsv552317 CNV loss 21841781
nsv832024 CNV loss 17160897
nsv948227 CNV duplication 23825009
nsv951878 CNV duplication 24416366

Additional Variant Information for C10orf143 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C10orf143

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C10orf143 Gene

Disorders for C10orf143 Gene

MalaCards: The human disease database

(1) MalaCards diseases for C10orf143 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with C10orf143: view

No data available for UniProtKB/Swiss-Prot and Genatlas for C10orf143 Gene

Publications for C10orf143 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 4 58

Products for C10orf143 Gene

Sources for C10orf143 Gene

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