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Aliases for C10orf142 Gene

Aliases for C10orf142 Gene

  • Chromosome 10 Open Reading Frame 142 2 3 5
  • Uncharacterized Protein C10orf142 3 4

External Ids for C10orf142 Gene

Summaries for C10orf142 Gene

GeneCards Summary for C10orf142 Gene

C10orf142 (Chromosome 10 Open Reading Frame 142) is a Protein Coding gene.

Additional gene information for C10orf142 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf142 Gene

Genomics for C10orf142 Gene

GeneHancer (GH) Regulatory Elements for C10orf142 Gene

Promoters and enhancers for C10orf142 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J044292 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 600.7 +1.3 1278 2.9 IKZF1 IKZF2 ZNF239 ZNF311 MNT MLLT1 ZIK1 JUND HDGF NR2F2 ENSG00000229116 C10orf142 ZNF32-AS2 CXCL12 CEP164P1 PIR52448
GH10J044280 Enhancer 0.5 Ensembl ENCODE 0.4 -11.7 -11669 1.6 MNT CXCL12 C10orf142 ENSG00000237590
GH10J044263 Enhancer 0.6 Ensembl 0.3 -28.5 -28468 1.4 MAFK IKZF1 IKZF2 ZNF316 EED RUNX3 MAFG BATF ENSG00000229116 ENSG00000237590 C10orf142
GH10J044281 Enhancer 0.3 Ensembl 0.4 -13.0 -12968 0.4 HLF C10orf142 ENSG00000237590
GH10J044279 Enhancer 0.2 ENCODE 0.4 -13.3 -13321 0.2 C10orf142 ENSG00000237590
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C10orf142 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C10orf142 Gene

Genomic Locations for C10orf142 Gene
chr10:44,292,569-44,294,649
(GRCh38/hg38)
Size:
2,081 bases
Orientation:
Plus strand
chr10:44,788,204-44,790,179
(GRCh37/hg19)
Size:
1,976 bases
Orientation:
Plus strand

Genomic View for C10orf142 Gene

Genes around C10orf142 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C10orf142 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf142 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf142 Gene

Proteins for C10orf142 Gene

  • Protein details for C10orf142 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B7Z368-CJ142_HUMAN
    Recommended name:
    Uncharacterized protein C10orf142
    Protein Accession:
    B7Z368

    Protein attributes for C10orf142 Gene

    Size:
    130 amino acids
    Molecular mass:
    13757 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C10orf142 Gene

Post-translational modifications for C10orf142 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C10orf142 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf142 Gene

Domains & Families for C10orf142 Gene

Gene Families for C10orf142 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C10orf142 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf142: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf142 Gene

Function for C10orf142 Gene

Phenotypes From GWAS Catalog for C10orf142 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf142 Gene

Localization for C10orf142 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C10orf142 Gene

Pathways & Interactions for C10orf142 Gene

PathCards logo

SuperPathways for C10orf142 Gene

No Data Available

Interacting Proteins for C10orf142 Gene

Gene Ontology (GO) - Biological Process for C10orf142 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C10orf142 Gene

Drugs & Compounds for C10orf142 Gene

No Compound Related Data Available

Transcripts for C10orf142 Gene

mRNA/cDNA for C10orf142 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf142 Gene

No ASD Table

Relevant External Links for C10orf142 Gene

GeneLoc Exon Structure for
C10orf142
ECgene alternative splicing isoforms for
C10orf142

Expression for C10orf142 Gene

NURSA nuclear receptor signaling pathways regulating expression of C10orf142 Gene:

C10orf142
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C10orf142 Gene

Orthologs for C10orf142 Gene

Evolution for C10orf142 Gene

ENSEMBL:
Gene Tree for C10orf142 (if available)
TreeFam:
Gene Tree for C10orf142 (if available)

No data available for Orthologs for C10orf142 Gene

Paralogs for C10orf142 Gene

Pseudogenes.org Pseudogenes for C10orf142 Gene

genes like me logo Genes that share paralogs with C10orf142: view

No data available for Paralogs for C10orf142 Gene

Variants for C10orf142 Gene

Sequence variations from dbSNP and Humsavar for C10orf142 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000221928 -- 44,293,659(+) G/A intron_variant
rs1000678768 -- 44,293,481(+) C/G coding_sequence_variant, missense_variant
rs1003489199 -- 44,291,117(+) A/T upstream_transcript_variant
rs1003852543 -- 44,294,746(+) G/C downstream_transcript_variant
rs1004414969 -- 44,293,990(+) T/C 3_prime_UTR_variant

Structural Variations from Database of Genomic Variants (DGV) for C10orf142 Gene

Variant ID Type Subtype PubMed ID
nsv1038511 CNV loss 25217958
nsv1068305 CNV deletion 25765185
nsv1126250 CNV deletion 24896259
nsv483001 CNV loss 15286789
nsv508579 CNV deletion 20534489

Additional Variant Information for C10orf142 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C10orf142

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C10orf142 Gene

Disorders for C10orf142 Gene

Additional Disease Information for C10orf142

No disorders were found for C10orf142 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf142 Gene

Publications for C10orf142 Gene

  1. Genomewide association analysis of coronary artery disease. (PMID: 17634449) Samani NJ … WTCCC and the Cardiogenics Consortium (The New England journal of medicine 2007) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58
  3. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 4 58

Products for C10orf142 Gene

Sources for C10orf142 Gene

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