Aliases for C10orf126 Gene

Subcategory (RNA class) for C10orf126 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for C10orf126 Gene

  • Chromosome 10 Open Reading Frame 126 2 3
  • BA492M23.1 2 3
  • LINC01517 5 165
  • Long Intergenic Non-Protein Coding RNA 1517 5
  • Putative Uncharacterized Protein C10orf126 4
  • NONHSAG005487.2 91
  • NONHSAG005492.2 91
  • HSALNG0076923 164
  • HSALNG0076936 164
  • MGC45541 2

External Ids for C10orf126 Gene

Previous GeneCards Identifiers for C10orf126 Gene

  • GC00U916890
  • GC10U900733
  • GC10P029177
  • GC10P028846
  • GC10P028745

Summaries for C10orf126 Gene

GeneCards Summary for C10orf126 Gene

C10orf126 (Chromosome 10 Open Reading Frame 126) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with C10orf126 include Uterine Body Mixed Cancer and Uterine Carcinosarcoma.

Additional gene information for C10orf126 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C10orf126 Gene

Genomics for C10orf126 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C10orf126 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C10orf126 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C10orf126

Genomic Locations for C10orf126 Gene

Genomic Locations for C10orf126 Gene
chr10:28,743,506-28,941,910
(GRCh38/hg38)
Size:
198,405 bases
Orientation:
Plus strand
chr10:29,135,337-29,170,827
(GRCh37/hg19)
Size:
35,491 bases
Orientation:
Plus strand

Genomic View for C10orf126 Gene

Genes around C10orf126 on UCSC Golden Path with GeneCards custom track
C10orf126 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
C10orf126 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf126 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf126 Gene

Proteins for C10orf126 Gene

  • Protein details for C10orf126 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N4M7-CJ126_HUMAN
    Recommended name:
    Putative uncharacterized protein C10orf126
    Protein Accession:
    Q8N4M7
    Secondary Accessions:
    • Q5T2Z8

    Protein attributes for C10orf126 Gene

    Size:
    172 amino acids
    Molecular mass:
    19474 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C10orf126 Gene

Post-translational modifications for C10orf126 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C10orf126 Gene

Domains & Families for C10orf126 Gene

Protein Domains for C10orf126 Gene

ProtoNet:
genes like me logo Genes that share domains with C10orf126: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C10orf126 Gene

Function for C10orf126 Gene

Phenotypes From GWAS Catalog for C10orf126 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf126 Gene

Localization for C10orf126 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C10orf126 gene
Compartment Confidence
extracellular 1
mitochondrion 1
peroxisome 1
cytosol 1
plasma membrane 0

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C10orf126 Gene

Pathways & Interactions for C10orf126 Gene

PathCards logo

SuperPathways for C10orf126 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C10orf126 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C10orf126 Gene

Drugs & Compounds for C10orf126 Gene

No Compound Related Data Available

Transcripts for C10orf126 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for C10orf126 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000851F4_9606 lncRNA 980 4

Ensembl: ENST00000426922 (view in UCSC) ,

LncBook: HSALNT0160459,

LNCipedia: LINC01517:10,

NONCODE: NONHSAT155277.1,

URS00009B0459_9606 lncRNA 539 4

Ensembl: ENST00000611112 (view in UCSC) ,

LncBook: HSALNT0160456,

LNCipedia: LINC01517:8,

NONCODE: NONHSAT155275.1,

URS00008BE64B_9606 lncRNA 267 4

Ensembl: ENST00000603866 (view in UCSC) ,

LncBook: HSALNT0160471,

LNCipedia: LINC01517:15,

NONCODE: NONHSAT012499.2,

URS00007CBBA3_9606 lncRNA 2149 3

RefSeq: NR_164114,

Ensembl: ENST00000375520 (view in UCSC) ,

LNCipedia: LINC01517:32,

URS00009B87DC_9606 lncRNA 908 3

Ensembl: ENST00000616194 (view in UCSC) ,

LNCipedia: LINC01517:9,

NONCODE: NONHSAT155276.1,

C10orf126 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for C10orf126 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C10orf126

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf126 Gene

No ASD Table

Relevant External Links for C10orf126 Gene

GeneLoc Exon Structure for
C10orf126

Expression for C10orf126 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C10orf126 Gene

mRNA differential expression in normal tissues according to GTEx for C10orf126 Gene

This gene is overexpressed in Kidney - Cortex (x19.8), Testis (x13.5), and Liver (x7.1).

Protein differential expression in normal tissues from HIPED for C10orf126 Gene

This gene is overexpressed in Lung (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C10orf126 Gene



Protein tissue co-expression partners for C10orf126 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C10orf126

SOURCE GeneReport for Unigene cluster for C10orf126 Gene:

Hs.591370
genes like me logo Genes that share expression patterns with C10orf126: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C10orf126 Gene

Orthologs for C10orf126 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C10orf126 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC101059856 30
  • 99.22 (n)
Species where no ortholog for C10orf126 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for C10orf126 Gene

ENSEMBL:
Gene Tree for C10orf126 (if available)
TreeFam:
Gene Tree for C10orf126 (if available)

Paralogs for C10orf126 Gene

No data available for Paralogs for C10orf126 Gene

Variants for C10orf126 Gene

Additional dbSNP identifiers (rs#s) for C10orf126 Gene

Structural Variations from Database of Genomic Variants (DGV) for C10orf126 Gene

Variant ID Type Subtype PubMed ID
esv2734606 CNV deletion 23290073
esv3344326 CNV insertion 20981092
esv3578745 CNV loss 25503493
nsv1142091 CNV tandem duplication 24896259

Variation tolerance for C10orf126 Gene

Gene Damage Index Score: 0.72; 15.31% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C10orf126 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C10orf126

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C10orf126 Gene

Disorders for C10orf126 Gene

MalaCards: The human disease database

(2) MalaCards diseases for C10orf126 Gene - From: DISEASES

Disorder Aliases PubMed IDs
uterine body mixed cancer
  • malignant mixed tumor of corpus uteri
uterine carcinosarcoma
  • mixed mullerian sarcoma of uterus
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for C10orf126

genes like me logo Genes that share disorders with C10orf126: view

No data available for UniProtKB/Swiss-Prot and Genatlas for C10orf126 Gene

Publications for C10orf126 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  3. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 4
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for C10orf126 Gene

Sources for C10orf126 Gene