Aliases for C10orf113 Gene

Data sources for C10orf113 Gene:

RNA type for C10orf113 Gene

lncRNA

Aliases for C10orf113 Gene

External Ids for C10orf113 Gene

  • UniProtKB/Swiss-Prot: Q5VZT2

Previous GeneCards Identifiers for C10orf113 Gene

  • GC10M021418
  • GC10M021455
  • GC10M021077
  • GC10M021414

Summaries for C10orf113 Gene

GeneCards Summary for C10orf113 Gene

C10orf113 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for C10orf113 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C10orf113 Gene

Genomics for C10orf113 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C10orf113 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J021145 Enhancer 0.6 Ensembl ENCODE 250.7 +0.6 558 1.2 YY1 MYNN RFX1 MNT USF1 C10orf113 lnc-C10orf113-1 piR-61101-051 HSALNG0076564 NEBL
GH10J021147 Enhancer 0.2 FANTOM5 251.9 -0.7 -714 0.3 C10orf113 lnc-C10orf113-1 NEBL HSALNG0076564
GH10J020892 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 9.2 +251.8 251830 5.3 ATF2 ZNF366 ATF7 CREB1 ZNF121 CEBPG NEBL C10orf113 HSALNG0076562 lnc-PLXDC2-10
GH10J021183 Enhancer 0.9 Ensembl ENCODE 11.1 -37.9 -37903 2.9 IKZF1 JUND ZNF592 ZNF10 MBD2 CTBP1 PRDM1 CUX1 ZNF316 KDM4B C10orf113 HSALNG0076569 lnc-MLLT10-5 NEBL
GH10J021194 Enhancer 0.9 Ensembl ENCODE 10.9 -48.4 -48398 1.7 NFIC CEBPB ZNF217 EP300 ELF1 FOXA2 CTBP1 CUX1 RFX5 SIN3A C10orf113 HSALNG0076569 lnc-MLLT10-5 NEBL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C10orf113 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C10orf113

Top Transcription factor binding sites by QIAGEN in the C10orf113 gene promoter:
  • Brachyury
  • E47
  • POU2F1
  • POU2F1a
  • POU3F2
  • SRF
  • SRF (504 AA)
  • SRY
  • TBP

Genomic Locations for C10orf113 Gene

Latest Assembly
chr10:21,125,763-21,146,559
(GRCh38/hg38)
Size:
20,797 bases
Orientation:
Minus strand

Genomic View for C10orf113 Gene

Genes around C10orf113 on UCSC Golden Path with GeneCards custom track
C10orf113 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

C10orf113 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf113 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for C10orf113 Gene

Proteins for C10orf113 Gene

  • Protein details for C10orf113 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VZT2-CJ113_HUMAN
    Recommended name:
    Putative uncharacterized protein C10orf113
    Protein Accession:
    Q5VZT2
    Secondary Accessions:
    • B9EIM9
    • E9PRX7

    Protein attributes for C10orf113 Gene

    Size:
    155 amino acids
    Molecular mass:
    17689 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAI40745.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};

    Alternative splice isoforms for C10orf113 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C10orf113 Gene

Post-translational modifications for C10orf113 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C10orf113 Gene

Domains & Families for C10orf113 Gene

Gene Families for C10orf113 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C10orf113 Gene

InterPro:
genes like me logo Genes that share domains with C10orf113: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C10orf113 Gene

Function for C10orf113 Gene

Phenotypes From GWAS Catalog for C10orf113 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf113 Gene

Localization for C10orf113 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C10orf113 gene
Compartment Confidence
cytosol 2
nucleus 1
extracellular 0
mitochondrion 0

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C10orf113 Gene

Pathways & Interactions for C10orf113 Gene

PathCards logo

SuperPathways for C10orf113 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C10orf113 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C10orf113 Gene

Drugs & Compounds for C10orf113 Gene

No Compound Related Data Available

Transcripts for C10orf113 Gene

C10orf113 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C10orf113

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf113 Gene

No ASD Table

Relevant External Links for C10orf113 Gene

GeneLoc Exon Structure for
C10orf113

No data available for mRNA/cDNA for C10orf113 Gene

Expression for C10orf113 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C10orf113 Gene

mRNA differential expression in normal tissues according to GTEx for C10orf113 Gene

This gene is overexpressed in Testis (x11.3) and Skin - Not Sun Exposed (Suprapubic) (x4.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C10orf113 Gene



Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C10orf113

genes like me logo Genes that share expression patterns with C10orf113: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C10orf113 Gene

Orthologs for C10orf113 Gene

No data available for Orthologs and Evolution for C10orf113 Gene

Paralogs for C10orf113 Gene

No data available for Paralogs for C10orf113 Gene

Variants for C10orf113 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C10orf113 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
rs11591355 -- p.Arg72Gly
rs625223 -- p.Asp110His

Structural Variations from Database of Genomic Variants (DGV) for C10orf113 Gene

Variant ID Type Subtype PubMed ID
esv3331302 CNV insertion 20981092
nsv1119787 CNV deletion 24896259
nsv831806 CNV gain 17160897

Variation tolerance for C10orf113 Gene

Residual Variation Intolerance Score: 90.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.52; 88.84% of all genes are more intolerant (likely to be disease-causing)

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Additional Variant Information for C10orf113 Gene

Disorders for C10orf113 Gene

No disorders were found for C10orf113 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for C10orf113 Gene

Publications for C10orf113 Gene

  1. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4

Products for C10orf113 Gene

Sources for C10orf113 Gene