Aliases for BTF3P9 Gene

Aliases for BTF3P9 Gene

  • Basic Transcription Factor 3 Pseudogene 9 2 3 5
  • BTF3P9 5

External Ids for BTF3P9 Gene

Previous GeneCards Identifiers for BTF3P9 Gene

  • GC01P227623
  • GC01P198138

Summaries for BTF3P9 Gene

GeneCards Summary for BTF3P9 Gene

BTF3P9 (Basic Transcription Factor 3 Pseudogene 9) is a Pseudogene.

Additional gene information for BTF3P9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BTF3P9 Gene

Genomics for BTF3P9 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BTF3P9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J227431 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.9 -1866 1.5 MYC NCOR1 ZNF600 IKZF1 ZNF592 ZSCAN16 NFIC ZBTB10 REST HES1 BTF3P9 RPS18P3 CICP26 ZNF678 C1orf35 CDC42BPA H3-4 JMJD4 PSEN2 LINC01641
GH01J227437 Enhancer 0.8 ENCODE 0.7 +4.1 4084 0.8 ZNF654 ZNF580 ZBTB10 YY1 REST CTCF NBN RAD21 RFX5 ELF1 CDC42BPA BTF3P9 HSALNG0011141 ZNF678 L13304-003
GH01J227441 Enhancer 0.6 Ensembl ENCODE 0.4 +6.5 6547 0.3 TEAD4 ARID1B CBFA2T2 RNF2 CBFA2T3 CDC42BPA BTF3P9 HSALNG0011141 ZNF678 L13304-003
GH01J227440 Enhancer 0.4 Ensembl ENCODE 0.4 +7.3 7288 0.8 RFX1 CDC42BPA BTF3P9 HSALNG0011141 ZNF678 L13304-003
GH01J227449 Enhancer 0.5 Ensembl 0.4 +16.0 15988 0.2 NFIC HES1 NR2F6 NFIB NR2F1 HSALNG0011141 CDC42BPA BTF3P9 ZNF678 L13304-003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BTF3P9 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BTF3P9 Gene

Latest Assembly
chr1:227,433,913-227,434,606
(GRCh38/hg38)
Size:
694 bases
Orientation:
Plus strand

Previous Assembly
chr1:227,621,614-227,622,307
(GRCh37/hg19 by Entrez Gene)
Size:
694 bases
Orientation:
Plus strand

chr1:227,621,765-227,622,047
(GRCh37/hg19 by Ensembl)
Size:
283 bases
Orientation:
Plus strand

Genomic View for BTF3P9 Gene

Genes around BTF3P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BTF3P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BTF3P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BTF3P9 Gene

Proteins for BTF3P9 Gene

Post-translational modifications for BTF3P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BTF3P9 Gene

Domains & Families for BTF3P9 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BTF3P9 Gene

Function for BTF3P9 Gene

Phenotypes From GWAS Catalog for BTF3P9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BTF3P9 Gene

Localization for BTF3P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BTF3P9 Gene

Pathways & Interactions for BTF3P9 Gene

PathCards logo

SuperPathways for BTF3P9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BTF3P9 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BTF3P9 Gene

Drugs & Compounds for BTF3P9 Gene

No Compound Related Data Available

Transcripts for BTF3P9 Gene

mRNA/cDNA for BTF3P9 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BTF3P9 Gene

No ASD Table

Relevant External Links for BTF3P9 Gene

GeneLoc Exon Structure for
BTF3P9

Expression for BTF3P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BTF3P9 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BTF3P9

SOURCE GeneReport for Unigene cluster for BTF3P9 Gene:

Hs.586511
genes like me logo Genes that share expression patterns with BTF3P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BTF3P9 Gene

Orthologs for BTF3P9 Gene

Evolution for BTF3P9 Gene

ENSEMBL:
Gene Tree for BTF3P9 (if available)
TreeFam:
Gene Tree for BTF3P9 (if available)
Alliance of Genome Resources:
Additional Orthologs for BTF3P9

No data available for Orthologs for BTF3P9 Gene

Paralogs for BTF3P9 Gene

No data available for Paralogs for BTF3P9 Gene

Variants for BTF3P9 Gene

Additional Variant Information for BTF3P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BTF3P9
Leiden Open Variation Database (LOVD)
BTF3P9

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BTF3P9 Gene

Disorders for BTF3P9 Gene

Additional Disease Information for BTF3P9

No disorders were found for BTF3P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BTF3P9 Gene

Publications for BTF3P9 Gene

  1. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 40
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for BTF3P9 Gene

Products for BTF3P9 Gene

Sources for BTF3P9 Gene