Aliases for BTBD7 Gene

Aliases for BTBD7 Gene

  • BTB Domain Containing 7 2 3 5
  • BTB/POZ Domain-Containing Protein 7 3 4
  • BTB (POZ) Domain Containing 7 2 3
  • FUP1 2 3
  • FLJ10648 2
  • KIAA1525 4
  • BTBD7 5

External Ids for BTBD7 Gene

Previous GeneCards Identifiers for BTBD7 Gene

  • GC14M091697
  • GC14M092776
  • GC14U900579
  • GC14M093703
  • GC14M073884

Summaries for BTBD7 Gene

GeneCards Summary for BTBD7 Gene

BTBD7 (BTB Domain Containing 7) is a Protein Coding gene.

UniProtKB/Swiss-Prot Summary for BTBD7 Gene

  • Acts as a mediator of epithelial dynamics and organ branching by promoting cleft progression. Induced following accumulation of fibronectin in forming clefts, leading to local expression of the cell-scattering SNAIL2 and suppression of E-cadherin levels, thereby altering cell morphology and reducing cell-cell adhesion. This stimulates cell separation at the base of forming clefts by local, dynamic intercellular gap formation and promotes cleft progression (By similarity).

Additional gene information for BTBD7 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BTBD7 Gene

Genomics for BTBD7 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BTBD7 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BTBD7 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for BTBD7

Top Transcription factor binding sites by QIAGEN in the BTBD7 gene promoter:
  • aMEF-2
  • GATA-1
  • Hlf
  • HSF2
  • LUN-1
  • MEF-2A
  • Sp1
  • Spz1
  • TBP
  • TGIF

Genomic Locations for BTBD7 Gene

Genomic Locations for BTBD7 Gene
chr14:93,237,550-93,333,092
(GRCh38/hg38)
Size:
95,543 bases
Orientation:
Minus strand
chr14:93,703,896-93,799,438
(GRCh37/hg19)
Size:
95,543 bases
Orientation:
Minus strand

Genomic View for BTBD7 Gene

Genes around BTBD7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BTBD7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BTBD7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BTBD7 Gene

Proteins for BTBD7 Gene

  • Protein details for BTBD7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P203-BTBD7_HUMAN
    Recommended name:
    BTB/POZ domain-containing protein 7
    Protein Accession:
    Q9P203
    Secondary Accessions:
    • A8K5V7
    • Q69Z05
    • Q7Z308
    • Q86TS0
    • Q9HAA4
    • Q9NVM0

    Protein attributes for BTBD7 Gene

    Size:
    1132 amino acids
    Molecular mass:
    126368 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA96049.2; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305}; Sequence=BAB13946.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; Sequence=BAB13946.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305}; Sequence=CAH10736.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};

    Alternative splice isoforms for BTBD7 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BTBD7 Gene

Post-translational modifications for BTBD7 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for BTBD7 Gene

Domains & Families for BTBD7 Gene

Gene Families for BTBD7 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for BTBD7 Gene

InterPro:
Blocks:
  • BTB/POZ domain
ProtoNet:

Suggested Antigen Peptide Sequences for BTBD7 Gene

GenScript: Design optimal peptide antigens:
  • BTB (POZ) domain containing 7 (A5D8X4_HUMAN)
  • BTB/POZ domain-containing protein 7 (BTBD7_HUMAN)
genes like me logo Genes that share domains with BTBD7: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BTBD7 Gene

Function for BTBD7 Gene

Molecular function for BTBD7 Gene

UniProtKB/Swiss-Prot Function:
Acts as a mediator of epithelial dynamics and organ branching by promoting cleft progression. Induced following accumulation of fibronectin in forming clefts, leading to local expression of the cell-scattering SNAIL2 and suppression of E-cadherin levels, thereby altering cell morphology and reducing cell-cell adhesion. This stimulates cell separation at the base of forming clefts by local, dynamic intercellular gap formation and promotes cleft progression (By similarity).

Phenotypes From GWAS Catalog for BTBD7 Gene

Gene Ontology (GO) - Molecular Function for BTBD7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IEA --
genes like me logo Genes that share ontologies with BTBD7: view
genes like me logo Genes that share phenotypes with BTBD7: view

Animal Models for BTBD7 Gene

MGI Knock Outs for BTBD7:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for BTBD7

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for BTBD7 Gene

Localization for BTBD7 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BTBD7 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BTBD7 gene
Compartment Confidence
nucleus 5
cytosol 2
plasma membrane 1
extracellular 1
cytoskeleton 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Focal adhesion sites (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for BTBD7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus ISS --
genes like me logo Genes that share ontologies with BTBD7: view

Pathways & Interactions for BTBD7 Gene

PathCards logo

SuperPathways for BTBD7 Gene

No Data Available

Interacting Proteins for BTBD7 Gene

Gene Ontology (GO) - Biological Process for BTBD7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007275 multicellular organism development IEA --
GO:0060693 regulation of branching involved in salivary gland morphogenesis IEA --
GO:0061138 morphogenesis of a branching epithelium IEA --
genes like me logo Genes that share ontologies with BTBD7: view

No data available for Pathways by source and SIGNOR curated interactions for BTBD7 Gene

Drugs & Compounds for BTBD7 Gene

No Compound Related Data Available

Transcripts for BTBD7 Gene

mRNA/cDNA for BTBD7 Gene

3 REFSEQ mRNAs :
13 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for BTBD7

Alternative Splicing Database (ASD) splice patterns (SP) for BTBD7 Gene

No ASD Table

Relevant External Links for BTBD7 Gene

GeneLoc Exon Structure for
BTBD7

Expression for BTBD7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BTBD7 Gene

Protein differential expression in normal tissues from HIPED for BTBD7 Gene

This gene is overexpressed in Prostate (19.5), Rectum (16.6), Gallbladder (11.7), Urinary Bladder (8.7), and Fetal gut (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for BTBD7 Gene



Protein tissue co-expression partners for BTBD7 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BTBD7

SOURCE GeneReport for Unigene cluster for BTBD7 Gene:

Hs.525549

Evidence on tissue expression from TISSUES for BTBD7 Gene

  • Nervous system(4.5)
  • Kidney(2.1)
genes like me logo Genes that share expression patterns with BTBD7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for BTBD7 Gene

Orthologs for BTBD7 Gene

This gene was present in the common ancestor of animals.

Orthologs for BTBD7 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia BTBD7 30 31
  • 99.73 (n)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia BTBD7 31
  • 94 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia BTBD7 30 31
  • 93.22 (n)
OneToOne
Cow
(Bos Taurus)
Mammalia BTBD7 30 31
  • 93.01 (n)
OneToOne
Rat
(Rattus norvegicus)
Mammalia Btbd7 30
  • 91.67 (n)
Mouse
(Mus musculus)
Mammalia Btbd7 30 17 31
  • 90.43 (n)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia BTBD7 31
  • 90 (a)
OneToOne
Chicken
(Gallus gallus)
Aves BTBD7 30 31
  • 82.1 (n)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia BTBD7 31
  • 87 (a)
OneToOne
Tropical Clawed Frog
(Silurana tropicalis)
Amphibia btbd7 30
  • 77.25 (n)
Zebrafish
(Danio rerio)
Actinopterygii btbd7 30 31
  • 67.62 (n)
OneToOne
Fruit Fly
(Drosophila melanogaster)
Insecta CG16952 31
  • 36 (a)
OneToOne
Worm
(Caenorhabditis elegans)
Secernentea C39F7.5 31
  • 27 (a)
OneToOne
Sea Squirt
(Ciona savignyi)
Ascidiacea -- 31
  • 27 (a)
OneToOne
Species where no ortholog for BTBD7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)

Evolution for BTBD7 Gene

ENSEMBL:
Gene Tree for BTBD7 (if available)
TreeFam:
Gene Tree for BTBD7 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for BTBD7: view image

Paralogs for BTBD7 Gene

Pseudogenes.org Pseudogenes for BTBD7 Gene

genes like me logo Genes that share paralogs with BTBD7: view

No data available for Paralogs for BTBD7 Gene

Variants for BTBD7 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for BTBD7 Gene

SNP ID Clinical significance and condition Chr 14 pos Variation AA Info Type
rs55659625 Benign: not specified 93,246,298(-) TA/T INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for BTBD7 Gene

Structural Variations from Database of Genomic Variants (DGV) for BTBD7 Gene

Variant ID Type Subtype PubMed ID
dgv383n67 CNV gain 20364138
esv26222 CNV loss 19812545
esv3451062 CNV duplication 20981092
esv3635357 CNV gain 21293372
nsv518613 CNV loss 19592680
nsv565575 CNV loss 21841781
nsv820297 CNV loss 19587683
nsv820783 CNV duplication 20802225

Variation tolerance for BTBD7 Gene

Residual Variation Intolerance Score: 7.44% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.43; 63.97% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for BTBD7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BTBD7

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BTBD7 Gene

Disorders for BTBD7 Gene

No disorders were found for BTBD7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BTBD7 Gene

Publications for BTBD7 Gene

  1. Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10819331) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2000) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  4. FUP1, a gene associated with hepatocellular carcinoma, stimulates NIH3T3 cell proliferation and tumor formation in nude mice. (PMID: 11527404) Pan W … Li TP (Biochemical and biophysical research communications 2001) 2 3
  5. Sleeping beauty genetic screen identifies miR-23b::BTBD7 gene interaction as crucial for colorectal cancer metastasis. (PMID: 31303496) Grisard E … Nicoloso MS (EBioMedicine 2019) 3

Products for BTBD7 Gene

Sources for BTBD7 Gene