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Aliases for BSN-DT Gene

Subcategory (RNA class) for BSN-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for BSN-DT Gene

  • BSN Divergent Transcript 2 3
  • BSN Antisense RNA 2 (Head To Head) 2 3 5
  • BSN Antisense RNA 2 (Non-Protein Coding) 2 3
  • BSN-AS2 3 5

External Ids for BSN-DT Gene

Previous HGNC Symbols for BSN-DT Gene

  • BSN-AS2

Summaries for BSN-DT Gene

GeneCards Summary for BSN-DT Gene

BSN-DT (BSN Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BSN-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BSN-DT Gene

Genomics for BSN-DT Gene

GeneHancer (GH) Regulatory Elements for BSN-DT Gene

Promoters and enhancers for BSN-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J049553 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 650.7 +0.2 230 1.7 HDGF PKNOX1 ATF1 MLX ARNT ARID4B SIN3A DMAP1 YBX1 ZNF143 BSN BSN-DT APEH PIR41851 GC03P049421
GH03J049484 Enhancer 1.3 Ensembl ENCODE dbSUPER 20.7 +69.1 69130 1.9 FOXA2 MLX ZFP64 ARID4B ZNF48 ZNF213 NFKBIZ ZC3H11A REST ZNF623 AMT ENSG00000235236 RBM6 QRICH1 RBM5 WDR6 IP6K2 ENSG00000223343 ENSG00000230454 BSN-DT
GH03J049670 Enhancer 1.1 Ensembl ENCODE 10.8 -117.2 -117155 1.8 HDGF FOXA2 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 RUNX3 NFKBIZ APEH AMT BSN-AS1 BSN BSN-DT CDHR4 UBA7 MST1 PIR32155 GC03P049421
GH03J049666 Enhancer 0.9 ENCODE 11.5 -112.1 -112141 0.8 ELF3 MLX ARID4B RAD21 THRB RARA ETS1 ZNF614 EGR1 CREM BSN-AS1 BSN BSN-DT CDHR4 AMT PIR32155 APEH GC03P049421
GH03J049665 Enhancer 0.8 ENCODE 11.5 -111.6 -111617 0.2 ELF3 MLX ARID4B RAD21 THRB RARA ZNF614 EGR1 THAP11 NFKBIZ BSN-AS1 BSN BSN-DT PIR32155 APEH GC03P049421
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BSN-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for BSN-DT Gene

Genomic Locations for BSN-DT Gene
chr3:49,549,306-49,554,366
(GRCh38/hg38)
Size:
5,061 bases
Orientation:
Minus strand
chr3:49,586,739-49,591,799
(GRCh37/hg19)

Genomic View for BSN-DT Gene

Genes around BSN-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BSN-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BSN-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BSN-DT Gene

Function for BSN-DT Gene

Phenotypes From GWAS Catalog for BSN-DT Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BSN-DT Gene

Localization for BSN-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BSN-DT Gene

Pathways & Interactions for BSN-DT Gene

SuperPathways for BSN-DT Gene

No Data Available

Interacting Proteins for BSN-DT Gene

Gene Ontology (GO) - Biological Process for BSN-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BSN-DT Gene

Drugs & Compounds for BSN-DT Gene

No Compound Related Data Available

Transcripts for BSN-DT Gene

mRNA/cDNA for BSN-DT Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BSN-DT Gene

No ASD Table

Relevant External Links for BSN-DT Gene

GeneLoc Exon Structure for
BSN-DT
ECgene alternative splicing isoforms for
BSN-DT

Expression for BSN-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BSN-DT Gene

Orthologs for BSN-DT Gene

Evolution for BSN-DT Gene

ENSEMBL:
Gene Tree for BSN-DT (if available)
TreeFam:
Gene Tree for BSN-DT (if available)

No data available for Orthologs for BSN-DT Gene

Paralogs for BSN-DT Gene

No data available for Paralogs for BSN-DT Gene

Variants for BSN-DT Gene

Sequence variations from dbSNP and Humsavar for BSN-DT Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000707980 -- 49,554,988(-) C/T upstream_transcript_variant
rs1001610963 -- 49,554,140(-) T/G non_coding_transcript_variant
rs1001641871 -- 49,554,293(-) C/A/T non_coding_transcript_variant
rs1001761653 -- 49,554,504(-) A/G upstream_transcript_variant
rs1001944658 -- 49,552,460(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BSN-DT Gene

Variant ID Type Subtype PubMed ID
esv3369484 CNV duplication 20981092
nsv834687 CNV loss 17160897

Additional Variant Information for BSN-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BSN-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BSN-DT Gene

Disorders for BSN-DT Gene

Additional Disease Information for BSN-DT

No disorders were found for BSN-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BSN-DT Gene

Publications for BSN-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for BSN-DT Gene

Sources for BSN-DT Gene

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