Aliases for BRWD1-IT1 Gene

Subcategory (RNA class) for BRWD1-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for BRWD1-IT1 Gene

  • BRWD1 Intronic Transcript 1 2 3 5
  • BRWD1-IT1 2 5 165
  • BRWD1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG032863.2 91
  • HSALNG0133121 164

External Ids for BRWD1-IT1 Gene

Previous GeneCards Identifiers for BRWD1-IT1 Gene

  • GC00U933390
  • GC21M040590

Summaries for BRWD1-IT1 Gene

GeneCards Summary for BRWD1-IT1 Gene

BRWD1-IT1 (BRWD1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BRWD1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BRWD1-IT1 Gene

Genomics for BRWD1-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BRWD1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J039232 Enhancer 0.2 Ensembl 0.4 -13.1 -13096 0.6 PSMG1 METTL21AP1 BRWD1-IT1 BRWD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BRWD1-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BRWD1-IT1 Gene

Genomic Locations for BRWD1-IT1 Gene
chr21:39,217,093-39,219,805
(GRCh38/hg38)
Size:
2,713 bases
Orientation:
Minus strand
chr21:40,589,019-40,591,731
(GRCh37/hg19)
Size:
2,713 bases
Orientation:
Minus strand

Genomic View for BRWD1-IT1 Gene

Genes around BRWD1-IT1 on UCSC Golden Path with GeneCards custom track
BRWD1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
BRWD1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BRWD1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for BRWD1-IT1 Gene

Proteins for BRWD1-IT1 Gene

Post-translational modifications for BRWD1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BRWD1-IT1 Gene

Domains & Families for BRWD1-IT1 Gene

Gene Families for BRWD1-IT1 Gene

genes like me logo Genes that share domains with BRWD1-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BRWD1-IT1 Gene

Function for BRWD1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BRWD1-IT1 Gene

Localization for BRWD1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BRWD1-IT1 Gene

Pathways & Interactions for BRWD1-IT1 Gene

PathCards logo

SuperPathways for BRWD1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BRWD1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BRWD1-IT1 Gene

Drugs & Compounds for BRWD1-IT1 Gene

No Compound Related Data Available

Transcripts for BRWD1-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BRWD1-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000347CF6_9606 lncRNA 489 5

HGNC: 41920,

Ensembl: ENST00000435608 (view in UCSC) ,

LncBook: HSALNT0273690,

LNCipedia: BRWD1-IT1:1,

NONCODE: NONHSAT082156.2,

BRWD1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for BRWD1-IT1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for BRWD1-IT1 Gene

No ASD Table

Relevant External Links for BRWD1-IT1 Gene

GeneLoc Exon Structure for
BRWD1-IT1

Expression for BRWD1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BRWD1-IT1 Gene

genes like me logo Genes that share expression patterns with BRWD1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BRWD1-IT1 Gene

Orthologs for BRWD1-IT1 Gene

Evolution for BRWD1-IT1 Gene

ENSEMBL:
Gene Tree for BRWD1-IT1 (if available)
TreeFam:
Gene Tree for BRWD1-IT1 (if available)

No data available for Orthologs for BRWD1-IT1 Gene

Paralogs for BRWD1-IT1 Gene

No data available for Paralogs for BRWD1-IT1 Gene

Variants for BRWD1-IT1 Gene

Additional Variant Information for BRWD1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BRWD1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BRWD1-IT1 Gene

Disorders for BRWD1-IT1 Gene

Additional Disease Information for BRWD1-IT1

No disorders were found for BRWD1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BRWD1-IT1 Gene

Publications for BRWD1-IT1 Gene

No publications were found for BRWD1-IT1 Gene.

No data available for Mastermind for BRWD1-IT1 Gene

Products for BRWD1-IT1 Gene

Sources for BRWD1-IT1 Gene