Aliases for BRWD1-AS2 Gene

Subcategory (RNA class) for BRWD1-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for BRWD1-AS2 Gene

  • BRWD1 Antisense RNA 2 2 3 5
  • BRWD1 Intronic Transcript 2 (Non-Protein Coding) 2 3
  • NCRNA00257 3 4
  • BRWD1-IT2 3 4
  • BRWD1-AS2 2 5
  • C21orf87 3 4
  • Putative Uncharacterized Protein Encoded By BRWD1-AS2 4
  • Chromosome 21 Open Reading Frame 87 2
  • ATP1A1 Antisense Gene Protein 1 4
  • BRWD1 Intronic Transcript 2 4
  • Non-Protein Coding RNA 257 2
  • ATP1A1 Antisense RNA 1 4
  • NONHSAG032866.2 91
  • HSALNG0133127 164
  • Lnc-WRB-2 165

External Ids for BRWD1-AS2 Gene

Previous HGNC Symbols for BRWD1-AS2 Gene

  • C21orf87
  • NCRNA00257
  • BRWD1-IT2

Summaries for BRWD1-AS2 Gene

GeneCards Summary for BRWD1-AS2 Gene

BRWD1-AS2 (BRWD1 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BRWD1-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BRWD1-AS2 Gene

Genomics for BRWD1-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BRWD1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J039311 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.2 -219 3.8 ZNF221 SP1 CREB1 HNRNPL TEAD4 PRDM10 ZNF629 TFE3 LEF1 IKZF1 BRWD1 BRWD1-AS2 lnc-HMGN1-4 piR-42927 HMGN1 PSMG1 GET1 LCA5L BRWD1-AS1 SH3BGR
GH21J039318 Enhancer 1.3 FANTOM5 Ensembl ENCODE 26.3 +7.0 7001 4.5 CEBPG CREB1 ZNF512 LEF1 IKZF1 TARDBP ZHX2 JUND FOXA1 MTA2 BRWD1 lnc-BRWD1-1 PSMG1 BRWD1-AS2 HMGN1 BRWD1-AS1
GH21J039316 Enhancer 1.1 FANTOM5 ENCODE 26.2 +3.6 3649 1.8 REST LEF1 IKZF1 JUND FOXA1 PKNOX1 ZNF24 MTA1 SP1 BRD9 BRWD1-AS1 PSMG1 BRWD1-AS2 HMGN1 BRWD1 lnc-BRWD1-1
GH21J039114 Enhancer 0.8 Ensembl ENCODE 4.9 -198.5 -198507 1.6 PRDM10 ZIC2 PKNOX1 PBX2 CEBPB NFE2 FOS MAFG CEBPG JUND BRWD1 BRWD1-AS1 BRWD1-AS2 RPL23AP12 piR-48325-111 PSMG1 ETS2
GH21J039309 Enhancer 0.5 Ensembl 0.7 -4.4 -4406 1 POLR2A ZNF18 NR2F6 HDAC2 KDM1A ZBTB33 PSMG1 HMGN1 BRWD1-AS1 BRWD1-AS2 lnc-WRB-5 BRWD1 lnc-BRWD1-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BRWD1-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BRWD1-AS2 Gene

Genomic Locations for BRWD1-AS2 Gene
chr21:39,313,907-39,314,962
(GRCh38/hg38)
Size:
1,056 bases
Orientation:
Plus strand
chr21:40,685,861-40,686,888
(GRCh37/hg19)
Size:
1,028 bases
Orientation:
Minus strand

Genomic View for BRWD1-AS2 Gene

Genes around BRWD1-AS2 on UCSC Golden Path with GeneCards custom track
BRWD1-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
BRWD1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BRWD1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BRWD1-AS2 Gene

Proteins for BRWD1-AS2 Gene

  • Protein details for BRWD1-AS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P59051-BRAS2_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by BRWD1-AS2
    Protein Accession:
    P59051
    Secondary Accessions:
    • A1L3W1
    • D3DSH8

    Protein attributes for BRWD1-AS2 Gene

    Size:
    145 amino acids
    Molecular mass:
    16132 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BRWD1-AS2 Gene

Post-translational modifications for BRWD1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BRWD1-AS2 Gene

Domains & Families for BRWD1-AS2 Gene

Gene Families for BRWD1-AS2 Gene

Protein Domains for BRWD1-AS2 Gene

ProtoNet:
genes like me logo Genes that share domains with BRWD1-AS2: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BRWD1-AS2 Gene

Function for BRWD1-AS2 Gene

Phenotypes From GWAS Catalog for BRWD1-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BRWD1-AS2 Gene

Localization for BRWD1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BRWD1-AS2 Gene

Pathways & Interactions for BRWD1-AS2 Gene

PathCards logo

SuperPathways for BRWD1-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BRWD1-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BRWD1-AS2 Gene

Drugs & Compounds for BRWD1-AS2 Gene

No Compound Related Data Available

Transcripts for BRWD1-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BRWD1-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000076B847_9606 lncRNA 1028 3

Ensembl: ENST00000603064 (view in UCSC) ,

LNCipedia: lnc-WRB-2:6,

NONCODE: NONHSAT190982.1,

URS000075A6F2_9606 lncRNA 1009 2

HGNC: 16423,

RefSeq: NR_111942,

URS0000D576DB_9606 lncRNA 4994 2

LncBook: HSALNT0273697,

LNCipedia: lnc-WRB-2:9,

URS0000D58277_9606 lncRNA 4284 2

LncBook: HSALNT0273696,

LNCipedia: lnc-WRB-2:7,

URS0000D56F90_9606 lncRNA 2638 2

LncBook: HSALNT0273698,

LNCipedia: lnc-WRB-2:10,

BRWD1-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for BRWD1-AS2 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for BRWD1-AS2 Gene

No ASD Table

Relevant External Links for BRWD1-AS2 Gene

GeneLoc Exon Structure for
BRWD1-AS2

Expression for BRWD1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BRWD1-AS2 Gene

Protein differential expression in normal tissues from HIPED for BRWD1-AS2 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for BRWD1-AS2 Gene



Protein tissue co-expression partners for BRWD1-AS2 Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BRWD1-AS2

genes like me logo Genes that share expression patterns with BRWD1-AS2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BRWD1-AS2 Gene

Orthologs for BRWD1-AS2 Gene

Evolution for BRWD1-AS2 Gene

ENSEMBL:
Gene Tree for BRWD1-AS2 (if available)
TreeFam:
Gene Tree for BRWD1-AS2 (if available)

No data available for Orthologs for BRWD1-AS2 Gene

Paralogs for BRWD1-AS2 Gene

No data available for Paralogs for BRWD1-AS2 Gene

Variants for BRWD1-AS2 Gene

Additional dbSNP identifiers (rs#s) for BRWD1-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for BRWD1-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv587480 CNV loss 21841781
nsv587482 CNV loss 21841781
nsv587483 CNV loss 21841781

Additional Variant Information for BRWD1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BRWD1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for BRWD1-AS2 Gene

Disorders for BRWD1-AS2 Gene

No disorders were found for BRWD1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BRWD1-AS2 Gene

Publications for BRWD1-AS2 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 4
  2. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz HJ … Yaspo ML (Nucleic acids research 2010) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  5. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 4

Products for BRWD1-AS2 Gene

Sources for BRWD1-AS2 Gene