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Aliases for BRWD1-AS1 Gene

Subcategory (RNA class) for BRWD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for BRWD1-AS1 Gene

  • BRWD1 Antisense RNA 1 2 3 5
  • BRWD1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for BRWD1-AS1 Gene

Previous GeneCards Identifiers for BRWD1-AS1 Gene

  • GC00U932973
  • GC21P040688
  • GC21P040689
  • GC21P040692
  • GC21P040694

Summaries for BRWD1-AS1 Gene

GeneCards Summary for BRWD1-AS1 Gene

BRWD1-AS1 (BRWD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BRWD1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BRWD1-AS1 Gene

Genomics for BRWD1-AS1 Gene

GeneHancer (GH) Regulatory Elements for BRWD1-AS1 Gene

Promoters and enhancers for BRWD1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J039316 Enhancer 1.3 FANTOM5 Ensembl ENCODE 658.4 +1.8 1849 1.8 PKNOX1 ATF1 ZNF766 GATA2 ZFP91 FOS ATF7 NCOA1 REST ZNF592 BRWD1-AS1 PSMG1 BRWD1-AS2 HMGN1 BRWD1
GH21J039317 Enhancer 0.4 ENCODE 650.7 +0.7 653 0.4 ATF4 EBF1 BRWD1-AS1 GC21M039313 PIR35926 PSMG1 BRWD1
GH21J039311 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 8.4 -2.2 -2228 3.4 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 BRWD1 BRWD1-AS2 GC21M039313 PIR35926 HMGN1 PSMG1 WRB RNF6P1 MYL6P2 LCA5L
GH21J039318 Enhancer 1.2 FANTOM5 ENCODE 8.1 +5.2 5201 4.5 HDGF PKNOX1 NEUROD1 SIN3A ZBTB7B ZNF121 ZFP91 FOS ZNF623 ZNF592 BRWD1 PSMG1 BRWD1-AS2 HMGN1 BRWD1-AS1
GH21J039125 Enhancer 1.1 Ensembl ENCODE 6.1 -189.6 -189601 1 YBX3 ELF3 HDGF NFIB RAD21 RARA EGR1 ZNF207 RCOR1 DEK RPL23AP12 GC21P039128 ERG PSMG1 BRWD1-AS1 ENSG00000237609
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BRWD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BRWD1-AS1 Gene

Genomic Locations for BRWD1-AS1 Gene
chr21:39,315,707-39,323,218
(GRCh38/hg38)
Size:
7,512 bases
Orientation:
Plus strand
chr21:40,687,633-40,695,144
(GRCh37/hg19)
Size:
7,512 bases
Orientation:
Plus strand

Genomic View for BRWD1-AS1 Gene

Genes around BRWD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BRWD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BRWD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BRWD1-AS1 Gene

Proteins for BRWD1-AS1 Gene

Post-translational modifications for BRWD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BRWD1-AS1 Gene

Domains & Families for BRWD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BRWD1-AS1 Gene

Function for BRWD1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BRWD1-AS1 Gene

Localization for BRWD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BRWD1-AS1 Gene

Pathways & Interactions for BRWD1-AS1 Gene

SuperPathways for BRWD1-AS1 Gene

No Data Available

Interacting Proteins for BRWD1-AS1 Gene

Gene Ontology (GO) - Biological Process for BRWD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BRWD1-AS1 Gene

Drugs & Compounds for BRWD1-AS1 Gene

No Compound Related Data Available

Transcripts for BRWD1-AS1 Gene

mRNA/cDNA for BRWD1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for BRWD1-AS1 Gene

BRWD1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BRWD1-AS1 Gene

No ASD Table

Relevant External Links for BRWD1-AS1 Gene

GeneLoc Exon Structure for
BRWD1-AS1
ECgene alternative splicing isoforms for
BRWD1-AS1

Expression for BRWD1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BRWD1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for BRWD1-AS1 Gene

This gene is overexpressed in Testis (x38.3).

SOURCE GeneReport for Unigene cluster for BRWD1-AS1 Gene:

Hs.588102
genes like me logo Genes that share expression patterns with BRWD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BRWD1-AS1 Gene

Orthologs for BRWD1-AS1 Gene

Evolution for BRWD1-AS1 Gene

ENSEMBL:
Gene Tree for BRWD1-AS1 (if available)
TreeFam:
Gene Tree for BRWD1-AS1 (if available)

No data available for Orthologs for BRWD1-AS1 Gene

Paralogs for BRWD1-AS1 Gene

No data available for Paralogs for BRWD1-AS1 Gene

Variants for BRWD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for BRWD1-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000151777 -- 39,322,115(+) T/C intron_variant
rs1000156880 -- 39,316,469(+) G/A intron_variant
rs1000647278 -- 39,320,464(+) A/G intron_variant
rs1000702840 -- 39,320,660(+) G/A intron_variant
rs1000860268 -- 39,314,803(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for BRWD1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1123561 CNV deletion 24896259
nsv587480 CNV loss 21841781
nsv587482 CNV loss 21841781
nsv587483 CNV loss 21841781

Additional Variant Information for BRWD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BRWD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BRWD1-AS1 Gene

Disorders for BRWD1-AS1 Gene

Additional Disease Information for BRWD1-AS1

No disorders were found for BRWD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BRWD1-AS1 Gene

Publications for BRWD1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for BRWD1-AS1 Gene

Sources for BRWD1-AS1 Gene

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