Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BRE-AS1 Gene

Subcategory (RNA class) for BRE-AS1 Gene

antisense

Quality Score for this RNA gene is

13

Aliases for BRE-AS1 Gene

  • BRE Antisense RNA 1 2 3
  • BRE Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for BRE-AS1 Gene

ORGUL Members for BRE-AS1 Gene

Previous GeneCards Identifiers for BRE-AS1 Gene

  • GC02M028113

Summaries for BRE-AS1 Gene

GeneCards Summary for BRE-AS1 Gene

BRE-AS1 (BRE Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class. Diseases associated with BRE-AS1 include Chromophobe Renal Cell Carcinoma.

Additional gene information for BRE-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BRE-AS1 Gene

Genomics for BRE-AS1 Gene

GeneHancer (GH) Regulatory Elements for BRE-AS1 Gene

Promoters and enhancers for BRE-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J027884 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 0.7 +2.4 2449 7.5 CLOCK DMAP1 YBX1 IRF4 YY1 ZNF213 E2F8 SP3 PPARGC1A MEF2D BABAM2 RBKS CAD ZNF513 GPN1 GTF3C2 LOC105374363 GTF3C2-AS1 TRMT61B SNX17
GH02J027893 Enhancer 0.4 FANTOM5 dbSUPER 0.7 -2.1 -2120 0.3 BABAM2 BRE-AS1 LOC100420770 MRPL33 GC02M027478
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BRE-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BRE-AS1 Gene

Genomic Locations for BRE-AS1 Gene
chr2:27,889,456-27,891,114
(GRCh38/hg38)
Size:
1,659 bases
Orientation:
Minus strand
chr2:28,112,323-28,113,981
(GRCh37/hg19)

Genomic View for BRE-AS1 Gene

Genes around BRE-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BRE-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BRE-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BRE-AS1 Gene

Proteins for BRE-AS1 Gene

Post-translational modifications for BRE-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BRE-AS1 Gene

Domains & Families for BRE-AS1 Gene

Gene Families for BRE-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BRE-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BRE-AS1 Gene

Function for BRE-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BRE-AS1 Gene

Localization for BRE-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BRE-AS1 Gene

Pathways & Interactions for BRE-AS1 Gene

SuperPathways for BRE-AS1 Gene

No Data Available

Interacting Proteins for BRE-AS1 Gene

Gene Ontology (GO) - Biological Process for BRE-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BRE-AS1 Gene

Drugs & Compounds for BRE-AS1 Gene

No Compound Related Data Available

Transcripts for BRE-AS1 Gene

mRNA/cDNA for BRE-AS1 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for BRE-AS1 Gene

BRE antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BRE-AS1 Gene

No ASD Table

Relevant External Links for BRE-AS1 Gene

GeneLoc Exon Structure for
BRE-AS1
ECgene alternative splicing isoforms for
BRE-AS1

Expression for BRE-AS1 Gene

SOURCE GeneReport for Unigene cluster for BRE-AS1 Gene:

Hs.729719
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BRE-AS1 Gene

Orthologs for BRE-AS1 Gene

No data available for Orthologs and Evolution for BRE-AS1 Gene

Paralogs for BRE-AS1 Gene

No data available for Paralogs for BRE-AS1 Gene

Variants for BRE-AS1 Gene

Sequence variations from dbSNP and Humsavar for BRE-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000150176 -- 27,891,731(-) C/T upstream_transcript_variant
rs1003695720 -- 27,892,912(-) C/T upstream_transcript_variant
rs1003725406 -- 27,892,624(-) A/G upstream_transcript_variant
rs1004735826 -- 27,892,535(-) A/C upstream_transcript_variant
rs1005265562 -- 27,892,990(-) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for BRE-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759034 CNV gain 17122850

Additional Variant Information for BRE-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BRE-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BRE-AS1 Gene

Disorders for BRE-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for BRE-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
chromophobe renal cell carcinoma
  • chromophobe adenocarcinoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for BRE-AS1

genes like me logo Genes that share disorders with BRE-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BRE-AS1 Gene

Publications for BRE-AS1 Gene

  1. Networks of Cultured iPSC-Derived Neurons Reveal the Human Synaptic Activity-Regulated Adaptive Gene Program. (PMID: 28052243) Pruunsild P … Bading H (Cell reports 2017) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Pan-genome isolation of low abundance transcripts using SAGE tag. (PMID: 17113583) Kim YC … Wang SM (FEBS letters 2006) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for BRE-AS1 Gene

Sources for BRE-AS1 Gene

Content
Loading form....