Aliases for BRD3OS Gene

Aliases for BRD3OS Gene

  • BRD3 Opposite Strand 2 3 5
  • Long Intergenic Non-Protein Coding RNA 94 2 3 4
  • Putative Uncharacterized Protein BRD3OS 3 4
  • BRD3 Opposite Strand Protein 3 4
  • Non-Protein Coding RNA 94 2 4
  • NCRNA00094 3 4
  • LINC00094 3 4
  • BA374P20.3 2
  • FLJ35348 2
  • LP2477 3
  • BRD3OS 5

External Ids for BRD3OS Gene

Previous HGNC Symbols for BRD3OS Gene

  • NCRNA00094
  • LINC00094

Previous GeneCards Identifiers for BRD3OS Gene

  • GC09P134042
  • GC09P134043
  • GC09P134044
  • GC09P134049
  • GC09P134037
  • GC09P134039
  • GC09P134040

Summaries for BRD3OS Gene

GeneCards Summary for BRD3OS Gene

BRD3OS (BRD3 Opposite Strand) is a Protein Coding gene. Diseases associated with BRD3OS include Lung Squamous Cell Carcinoma.

Additional gene information for BRD3OS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BRD3OS Gene

Genomics for BRD3OS Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BRD3OS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J134024 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 610.6 +0.2 225 2.6 SP1 CREB1 ZNF629 RFX1 IKZF1 ZNF692 BACH1 JUND LARP7 MTA2 BRD3OS lnc-BRD3OS-1 piR-59623 piR-54713 COL5A1 GTF3C5 BRD3
GH09J133029 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 22.7 -994.9 -994875 3.6 SP1 HNRNPL CREB1 GATAD2A PRDM10 REST ZNF629 SIX5 LEF1 SOX13 GTF3C5 LOC105376306 RF00017-8036 SETX TTF1 DDX31 TSC1 MED22 GTF3C4 BRD3OS
GH09J133416 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 13.6 -607.5 -607499 3.5 SP1 HNRNPL CREB1 GATAD2A TEAD4 PRDM10 ZNF629 SIX5 LEF1 IKZF1 REXO4 piR-56133-230 MED22 SURF1 SURF6 RPL7A GTF3C5 BRD3OS ADAMTS13 CACFD1
GH09J134363 Promoter/Enhancer 2 VISTA FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 13.6 +340.8 340763 5.4 ARHGAP35 HNRNPL CREB1 GATAD2A YBX1 TFE3 ZNF692 TARDBP ZHX2 FOXA1 WDR5 BRD3OS OLFM1 BRD3 RXRA lnc-BRD3-7 COL5A1
GH09J133236 Promoter/Enhancer 1.6 ENCODE CraniofacialAtlas dbSUPER 13.6 -787.2 -787217 3.3 HNRNPL CTCF TEAD4 PRDM10 RFX1 IKZF1 KDM1A ZNF692 RCOR2 PRDM1 ABO SETX BRD3OS OBP2B MED22 RPL7A EEF1A1P5 LCN1P1 RF00017-8040 lnc-ABO-33
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BRD3OS on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for BRD3OS

Genomic Locations for BRD3OS Gene

Genomic Locations for BRD3OS Gene
chr9:134,025,476-134,034,666
(GRCh38/hg38)
Size:
9,191 bases
Orientation:
Plus strand
chr9:136,890,561-136,899,788
(GRCh37/hg19)
Size:
9,228 bases
Orientation:
Plus strand

Genomic View for BRD3OS Gene

Genes around BRD3OS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BRD3OS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BRD3OS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BRD3OS Gene

Proteins for BRD3OS Gene

  • Protein details for BRD3OS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GUI7-BRDOS_HUMAN
    Recommended name:
    Putative uncharacterized protein BRD3OS
    Protein Accession:
    A0A1B0GUI7

    Protein attributes for BRD3OS Gene

    Size:
    84 amino acids
    Molecular mass:
    9747 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BRD3OS Gene

Post-translational modifications for BRD3OS Gene

No Post-translational modifications

Other Protein References for BRD3OS Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for BRD3OS Gene

Domains & Families for BRD3OS Gene

Gene Families for BRD3OS Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for BRD3OS Gene

ProtoNet:
genes like me logo Genes that share domains with BRD3OS: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BRD3OS Gene

Function for BRD3OS Gene

Phenotypes From GWAS Catalog for BRD3OS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BRD3OS Gene

Localization for BRD3OS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BRD3OS Gene

Pathways & Interactions for BRD3OS Gene

PathCards logo

SuperPathways for BRD3OS Gene

No Data Available

Interacting Proteins for BRD3OS Gene

Gene Ontology (GO) - Biological Process for BRD3OS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BRD3OS Gene

Drugs & Compounds for BRD3OS Gene

No Compound Related Data Available

Transcripts for BRD3OS Gene

mRNA/cDNA for BRD3OS Gene

1 REFSEQ mRNAs :
9 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BRD3OS Gene

No ASD Table

Relevant External Links for BRD3OS Gene

GeneLoc Exon Structure for
BRD3OS

Expression for BRD3OS Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BRD3OS

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BRD3OS Gene

Orthologs for BRD3OS Gene

Evolution for BRD3OS Gene

ENSEMBL:
Gene Tree for BRD3OS (if available)
TreeFam:
Gene Tree for BRD3OS (if available)

No data available for Orthologs for BRD3OS Gene

Paralogs for BRD3OS Gene

No data available for Paralogs for BRD3OS Gene

Variants for BRD3OS Gene

Additional dbSNP identifiers (rs#s) for BRD3OS Gene

Structural Variations from Database of Genomic Variants (DGV) for BRD3OS Gene

Variant ID Type Subtype PubMed ID
esv2739138 CNV deletion 23290073
esv3621950 CNV loss 21293372
esv3621951 CNV loss 21293372
nsv1125319 OTHER inversion 24896259
nsv428226 CNV loss 18775914
nsv466627 CNV loss 19166990
nsv466629 CNV loss 19166990
nsv512998 CNV insertion 21212237
nsv615774 CNV loss 21841781
nsv615779 CNV loss 21841781
nsv825148 CNV gain 20364138
nsv831748 CNV loss 17160897
nsv831749 CNV loss 17160897

Additional Variant Information for BRD3OS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BRD3OS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for BRD3OS Gene

Disorders for BRD3OS Gene

MalaCards: The human disease database

(1) MalaCards diseases for BRD3OS Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
lung squamous cell carcinoma
  • epidermoid cell carcinoma of the lung
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with BRD3OS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BRD3OS Gene

Publications for BRD3OS Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  3. Differential protein-coding gene and long noncoding RNA expression in smoking-related lung squamous cell carcinoma. (PMID: 28949095) Li S … Jiao W (Thoracic cancer 2017) 3
  4. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 4
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for BRD3OS Gene

Sources for BRD3OS Gene