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Aliases for BPI Gene

Aliases for BPI Gene

  • Bactericidal/Permeability-Increasing Protein 2 3 5
  • BPI Fold Containing Family D, Member 1 2 3
  • CAP 57 3 4
  • Bactericidal Permeability-Increasing Protein 3
  • Recombinant BPI Holoprotein, RBPI 3
  • BPIFD1 3
  • RBPI 3

External Ids for BPI Gene

Previous GeneCards Identifiers for BPI Gene

  • GC20P036661
  • GC20P037571
  • GC20P037618
  • GC20P036365
  • GC20P036888

Summaries for BPI Gene

Entrez Gene Summary for BPI Gene

  • This gene encodes a lipopolysaccharide binding protein. It is associated with human neutrophil granules and has antimicrobial activity against gram-negative organisms. [provided by RefSeq, Nov 2014]

GeneCards Summary for BPI Gene

BPI (Bactericidal/Permeability-Increasing Protein) is a Protein Coding gene. Diseases associated with BPI include Meningococcemia and Reactive Arthritis. Among its related pathways are Innate Immune System and Defensins. Gene Ontology (GO) annotations related to this gene include lipid binding and lipopolysaccharide binding. An important paralog of this gene is LBP.

UniProtKB/Swiss-Prot for BPI Gene

  • The cytotoxic action of BPI is limited to many species of Gram-negative bacteria; this specificity may be explained by a strong affinity of the very basic N-terminal half for the negatively charged lipopolysaccharides that are unique to the Gram-negative bacterial outer envelope. Has antibacterial activity against the Gram-nagative bacterium P.aeruginosa, this activity is inhibited by LPS from P.aeruginosa.

Additional gene information for BPI Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BPI Gene

Genomics for BPI Gene

GeneHancer (GH) Regulatory Elements for BPI Gene

Promoters and enhancers for BPI Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I038259 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.2 188 1.9 FOXA2 RFX1 RXRA ZSCAN4 MNT BMI1 ZIC2 ZNF48 FOXA1 RCOR2 BPI LOC149684 KIAA1755 TGM2
GH20I038303 Promoter/Enhancer 1.1 EPDnew Ensembl 575.6 +44.2 44220 1.9 CTCF NRF1 MAX RAD21 POLR2A IKZF1 VEZF1 SMC3 ZNF143 MYC BPI GC20P038303 ENSG00000206249 SNHG17 GC20M038311
GH20I038139 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 7.7 -104.2 -104159 33.6 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF143 MCM3 SP3 NFYC TGM2 SNHG17 RALGAPB ACTR5 RN7SKP173 SNORA71A TTI1 SNORA71C RPN2 DHX35
GH20I038291 Enhancer 1 Ensembl ENCODE 14.5 +31.4 31351 0.6 FOXA2 ARID4B SIN3A DMAP1 NFXL1 ZNF48 RAD21 RARA YY1 GLIS2 BPI GC20P038303 GC20P038267 ENSG00000206249
GH20I038298 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.9 +39.2 39249 2.4 HDGF NEUROD1 RCOR1 FOS REST ELF1 GATAD2B ZNF592 NR2F2 SREBF1 BPI ENSG00000206249 GC20P038303 GC20P038267
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BPI on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the BPI gene promoter:

Genomic Locations for BPI Gene

Genomic Locations for BPI Gene
chr20:38,260,149-38,337,505
(GRCh38/hg38)
Size:
77,357 bases
Orientation:
Plus strand
chr20:36,888,551-36,965,907
(GRCh37/hg19)

Genomic View for BPI Gene

Genes around BPI on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BPI Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BPI Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BPI Gene

Proteins for BPI Gene

  • Protein details for BPI Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P17213-BPI_HUMAN
    Recommended name:
    Bactericidal permeability-increasing protein
    Protein Accession:
    P17213
    Secondary Accessions:
    • B2RCY2
    • Q1ZZU8
    • Q5JRW0
    • Q8IW58
    • Q9BYZ9
    • Q9H1L2
    • Q9H1M8
    • Q9H203
    • Q9UCT4
    • Q9UD65

    Protein attributes for BPI Gene

    Size:
    487 amino acids
    Molecular mass:
    53900 Da
    Quaternary structure:
    • Monomer. Homodimer; disulfide-linked.

    Three dimensional structures from OCA and Proteopedia for BPI Gene

neXtProt entry for BPI Gene

Post-translational modifications for BPI Gene

  • Glycosylation at Asn380
  • Modification sites at PhosphoSitePlus

Other Protein References for BPI Gene

No data available for DME Specific Peptides for BPI Gene

Domains & Families for BPI Gene

Gene Families for BPI Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins
  • Predicted secreted proteins
  • Transporters

Suggested Antigen Peptide Sequences for BPI Gene

Graphical View of Domain Structure for InterPro Entry

P17213

UniProtKB/Swiss-Prot:

BPI_HUMAN :
  • The N-terminal region may be exposed to the interior of the granule, whereas the C-terminal portion may be embedded in the membrane. During phagocytosis and degranulation, proteases may be released and activated and cleave BPI at the junction of the N- and C-terminal portions of the molecule, providing controlled release of the N-terminal antibacterial fragment when bacteria are ingested.
  • Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.
Domain:
  • The N-terminal region may be exposed to the interior of the granule, whereas the C-terminal portion may be embedded in the membrane. During phagocytosis and degranulation, proteases may be released and activated and cleave BPI at the junction of the N- and C-terminal portions of the molecule, providing controlled release of the N-terminal antibacterial fragment when bacteria are ingested.
  • The N- and C-terminal barrels adopt an identical fold despite having only 13% of conserved residues.
Family:
  • Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.
genes like me logo Genes that share domains with BPI: view

Function for BPI Gene

Molecular function for BPI Gene

GENATLAS Biochemistry:
bactericidal permeability increasing protein,55kDa,released from azurophilic granules of neutrophiles,oxygen independent phagocytosis of Gram- bacteria
UniProtKB/Swiss-Prot Function:
The cytotoxic action of BPI is limited to many species of Gram-negative bacteria; this specificity may be explained by a strong affinity of the very basic N-terminal half for the negatively charged lipopolysaccharides that are unique to the Gram-negative bacterial outer envelope. Has antibacterial activity against the Gram-nagative bacterium P.aeruginosa, this activity is inhibited by LPS from P.aeruginosa.

Phenotypes From GWAS Catalog for BPI Gene

Gene Ontology (GO) - Molecular Function for BPI Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001530 lipopolysaccharide binding IDA 8409400
GO:0008289 lipid binding IEA --
genes like me logo Genes that share ontologies with BPI: view

Phenotypes for BPI Gene

GenomeRNAi human phenotypes for BPI:
genes like me logo Genes that share phenotypes with BPI: view

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BPI Gene

Localization for BPI Gene

Subcellular locations from UniProtKB/Swiss-Prot for BPI Gene

Secreted. Cytoplasmic granule membrane. Note=Membrane-associated in polymorphonuclear Leukocytes (PMN) granules. {ECO:0000269 PubMed:2722846}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BPI gene
Compartment Confidence
plasma membrane 5
extracellular 5
lysosome 5

Gene Ontology (GO) - Cellular Components for BPI Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IEA --
GO:0005737 cytoplasm IEA --
GO:0005887 integral component of plasma membrane TAS 2722846
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with BPI: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for BPI Gene

Pathways & Interactions for BPI Gene

genes like me logo Genes that share pathways with BPI: view

Interacting Proteins for BPI Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000262865%0d%0a9606.ENSP00000217407%0d%0a9606.ENSP00000354280%0d%0a
Selected Interacting proteins: P17213-BPI_HUMAN ENSP00000262865 for BPI Gene via IID STRING

Gene Ontology (GO) - Biological Process for BPI Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006955 immune response IEA --
GO:0019730 antimicrobial humoral response TAS --
GO:0032715 negative regulation of interleukin-6 production IDA 8409400
GO:0032717 negative regulation of interleukin-8 production IDA 8409400
GO:0032720 negative regulation of tumor necrosis factor production IDA 8409400
genes like me logo Genes that share ontologies with BPI: view

No data available for SIGNOR curated interactions for BPI Gene

Drugs & Compounds for BPI Gene

(15) Drugs for BPI Gene - From: DrugBank, ClinicalTrials, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Di-Stearoyl-3-Sn-Phosphatidylcholine Experimental Pharma Target 0
Liver Extracts Pharma 4411

(15) Additional Compounds for BPI Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with BPI: view

Transcripts for BPI Gene

Unigene Clusters for BPI Gene

Bactericidal/permeability-increasing protein:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BPI Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14a · 14b ^ 15a · 15b ^ 16a · 16b
SP1: - - - -
SP2: -
SP3: - -
SP4: -
SP5: -
SP6:

Relevant External Links for BPI Gene

GeneLoc Exon Structure for
BPI
ECgene alternative splicing isoforms for
BPI

Expression for BPI Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BPI Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for BPI Gene

This gene is overexpressed in Whole Blood (x39.4) and Testis (x4.6).

Protein differential expression in normal tissues from HIPED for BPI Gene

This gene is overexpressed in Neutrophil (26.8) and Nasal epithelium (19.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for BPI Gene



Protein tissue co-expression partners for BPI Gene

NURSA nuclear receptor signaling pathways regulating expression of BPI Gene:

BPI

SOURCE GeneReport for Unigene cluster for BPI Gene:

Hs.529019

mRNA Expression by UniProt/SwissProt for BPI Gene:

P17213-BPI_HUMAN
Tissue specificity: Restricted to cells of the myeloid series.

Evidence on tissue expression from TISSUES for BPI Gene

  • Blood(4.9)
  • Heart(4.2)
  • Bone marrow(3)
  • Lung(2.2)
genes like me logo Genes that share expression patterns with BPI: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for BPI Gene

Orthologs for BPI Gene

This gene was present in the common ancestor of chordates.

Orthologs for BPI Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BPI 33 34
  • 96.91 (n)
dog
(Canis familiaris)
Mammalia BPI 33 34
  • 77.46 (n)
cow
(Bos Taurus)
Mammalia BPI 33 34
  • 75.47 (n)
rat
(Rattus norvegicus)
Mammalia Bpi 33
  • 68.68 (n)
mouse
(Mus musculus)
Mammalia Bpi 33 16 34
  • 68.48 (n)
oppossum
(Monodelphis domestica)
Mammalia BPI 34
  • 37 (a)
OneToOne
chicken
(Gallus gallus)
Aves BPI 33
  • 61.86 (n)
-- 34
  • 49 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 46 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii bpifcl 33
  • 43.61 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 24 (a)
OneToMany
Species where no ortholog for BPI was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BPI Gene

ENSEMBL:
Gene Tree for BPI (if available)
TreeFam:
Gene Tree for BPI (if available)

Paralogs for BPI Gene

Paralogs for BPI Gene

(3) SIMAP similar genes for BPI Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with BPI: view

Variants for BPI Gene

Sequence variations from dbSNP and Humsavar for BPI Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs5743514 uncertain-significance, not specified 38,324,052(+) G/A intron_variant
rs1341023 benign, not specified 38,304,258(+) C/T coding_sequence_variant, missense_variant
rs1341024 benign, not specified 38,304,274(+) G/C/T coding_sequence_variant, synonymous_variant
rs4358188 benign, not specified 38,318,446(+) G/A coding_sequence_variant, missense_variant
rs5743507 benign, not specified 38,310,650(+) G/C coding_sequence_variant, synonymous_variant

Structural Variations from Database of Genomic Variants (DGV) for BPI Gene

Variant ID Type Subtype PubMed ID
dgv4309n100 CNV loss 25217958
esv2722392 CNV deletion 23290073
esv2722393 CNV deletion 23290073
esv2722394 CNV deletion 23290073
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
esv3645775 CNV loss 21293372
esv3645778 CNV loss 21293372
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv1071695 CNV deletion 25765185
nsv1077911 CNV duplication 25765185
nsv1142308 CNV tandem duplication 24896259
nsv585964 CNV loss 21841781
nsv817893 CNV gain 17921354
nsv954034 CNV deletion 24416366

Variation tolerance for BPI Gene

Residual Variation Intolerance Score: 96.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.32; 92.63% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for BPI Gene

Human Gene Mutation Database (HGMD)
BPI
SNPedia medical, phenotypic, and genealogical associations of SNPs for
BPI

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BPI Gene

Disorders for BPI Gene

MalaCards: The human disease database

(14) MalaCards diseases for BPI Gene - From: HGMD, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
meningococcemia
reactive arthritis
  • fiessinger leroy reiter syndrome
vasculitis
  • angiitis
crescentic glomerulonephritis
  • idiopathic crescentic glomerulonephritis
bronchiectasis
  • polynesian bronchiectasis
- elite association - COSMIC cancer census association via MalaCards
Search BPI in MalaCards View complete list of genes associated with diseases

Additional Disease Information for BPI

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with BPI: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BPI Gene

Publications for BPI Gene

  1. Polymorphisms in the lipopolysaccharide-binding protein and bactericidal/permeability-increasing protein in patients with myocardial infarction. (PMID: 12521224) Hubacek JA … Poledne R (Clinical chemistry and laboratory medicine 2002) 3 22 44 58
  2. Crystal structure of human BPI and two bound phospholipids at 2.4 angstrom resolution. (PMID: 9188532) Beamer LJ … Eisenberg D (Science (New York, N.Y.) 1997) 3 4 22 58
  3. Bactericidal/permeability-increasing protein and lipopolysaccharide (LPS)-binding protein. LPS binding properties and effects on LPS-mediated cell activation. (PMID: 7517398) Wilde CG … Scott RW (The Journal of biological chemistry 1994) 3 4 22 58
  4. Genetic susceptibility to distinct bladder cancer subphenotypes. (PMID: 19692168) Guey LT … EPICURO/Spanish Bladder Cancer Study investigators (European urology 2010) 3 44 58
  5. Risk of meningioma and common variation in genes related to innate immunity. (PMID: 20406964) Rajaraman P … Inskip PD (Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2010) 3 44 58

Products for BPI Gene

Sources for BPI Gene

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