Aliases for BOLA2-SMG1P6 Gene
External Ids for BOLA2-SMG1P6 Gene
- HGNC: 53563
- Entrez Gene: 107282092
- Ensembl: ENSG00000261740
Previous GeneCards Identifiers for BOLA2-SMG1P6 Gene
- GC16U902267
Summaries for BOLA2-SMG1P6 Gene
-
This gene represents naturally-occurring readthrough transcription between the upstream BOLA2 (bolA family member 2) and downstream SMG1 pseudogene 6 (SMG1P6) loci. Alternative splicing results in multiple transcript variants, some of which may encode proteins with an N-terminus similar to BOLA2 and a C-terminus related to SMG1 phosphatidylinositol 3-kinase-related kinase. [provided by RefSeq, Feb 2016]
GeneCards Summary for BOLA2-SMG1P6 Gene
BOLA2-SMG1P6 (BOLA2-SMG1P6 Readthrough) is a Protein Coding gene.
Additional gene information for BOLA2-SMG1P6 Gene
No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BOLA2-SMG1P6 Gene
Genomics for BOLA2-SMG1P6 Gene
GeneHancer (GH) Regulatory Elements for BOLA2-SMG1P6 Gene
Promoters and enhancers for BOLA2-SMG1P6 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16I029453 | Promoter/Enhancer | 1.2 | EPDnew Ensembl dbSUPER | 550.8 | +0.1 | 50 | 2 | BOLA2 SLX1B-SULT1A4 SLX1B BOLA2-SMG1P6 GC16P029442 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around BOLA2-SMG1P6 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for BOLA2-SMG1P6 Gene
Genomic Locations for BOLA2-SMG1P6 Gene
- chr16:29,443,230-29,454,651
- (GRCh38/hg38)
- Size:
- 11,422 bases
- Orientation:
- Minus strand
- chr16:29,454,551-29,465,972
- (GRCh37/hg19)
Genomic View for BOLA2-SMG1P6 Gene
Genes around BOLA2-SMG1P6 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 16p11.2 by Ensembl
- 16p11.2 by Entrez Gene
- 16p11.2 by HGNC
BOLA2-SMG1P6 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for BOLA2-SMG1P6 Gene
Proteins for BOLA2-SMG1P6 Gene
-
Protein details for BOLA2-SMG1P6 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- A0A0B4J295
- Recommended name:
- BOLA2-SMG1P6 readthrough
- Protein Accession:
- A0A0B4J295
Protein attributes for BOLA2-SMG1P6 Gene
- Size:
- 124 amino acids
- Molecular mass:
- 13658 Da
- Quaternary structure:
- No Data Available
-
Protein details for BOLA2-SMG1P6 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- H3BTW0
- Recommended name:
- BOLA2-SMG1P6 readthrough
- Protein Accession:
- H3BTW0
Protein attributes for BOLA2-SMG1P6 Gene
- Size:
- 89 amino acids
- Molecular mass:
- 9854 Da
- Quaternary structure:
- No Data Available
-
Protein details for BOLA2-SMG1P6 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- H3BVE0
- Recommended name:
- BOLA2-SMG1P6 readthrough
- Protein Accession:
- H3BVE0
Protein attributes for BOLA2-SMG1P6 Gene
- Size:
- 249 amino acids
- Molecular mass:
- 27665 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for BOLA2-SMG1P6 Gene
No Post-translational modifications
Other Protein References for BOLA2-SMG1P6 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Search GeneTex for Antibodies for BOLA2-SMG1P6
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for BOLA2-SMG1P6
- Origene Custom Protein Services for BOLA2-SMG1P6
- Search GeneTex for Proteins for BOLA2-SMG1P6
No data available for DME Specific Peptides for BOLA2-SMG1P6 Gene
Domains & Families for BOLA2-SMG1P6 Gene
Protein Domains for BOLA2-SMG1P6 Gene
- InterPro:
- ProtoNet:
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BOLA2-SMG1P6 Gene
Function for BOLA2-SMG1P6 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
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-
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CRISPR Products
- Browse CRISPR knockouts for BOLA2-SMG1P6
miRNA Products
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Inhibitory RNA Products
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Clone Products
- GenScript: Custom all cDNA clones Services for BOLA2-SMG1P6
- VectorBuilder custom plasmid, inducible vectors for BOLA2-SMG1P6
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for BOLA2-SMG1P6
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BOLA2-SMG1P6 Gene
Localization for BOLA2-SMG1P6 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BOLA2-SMG1P6 Gene
Pathways & Interactions for BOLA2-SMG1P6 Gene
No Data Available
Interacting Proteins for BOLA2-SMG1P6 Gene
No data available for Pathways by source and SIGNOR curated interactions for BOLA2-SMG1P6 Gene
Transcripts for BOLA2-SMG1P6 Gene
mRNA/cDNA for BOLA2-SMG1P6 Gene
- (6) REFSEQ mRNAs :
- (3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for BOLA2-SMG1P6
miRNA Products
- Search ViGene Biosciences for BOLA2-SMG1P6
Inhibitory RNA Products
- Search ViGene Biosciences for BOLA2-SMG1P6
Clone Products
- GenScript: Custom all cDNA clones Services for BOLA2-SMG1P6
- VectorBuilder custom plasmid, inducible vectors for BOLA2-SMG1P6
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for BOLA2-SMG1P6
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Relevant External Links for BOLA2-SMG1P6 Gene
- GeneLoc Exon Structure for
- BOLA2-SMG1P6
- ECgene alternative splicing isoforms for
- BOLA2-SMG1P6
Expression for BOLA2-SMG1P6 Gene
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BOLA2-SMG1P6 Gene
Orthologs for BOLA2-SMG1P6 Gene
This gene was present in the common ancestor of animals and fungi.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 34 |
|
OneToOne | |
| zebrafish (Danio rerio) |
Actinopterygii | smg1 34 |
|
OneToMany | |
| fruit fly (Drosophila melanogaster) |
Insecta | nonC 34 |
|
OneToMany | |
| worm (Caenorhabditis elegans) |
Secernentea | smg-1 34 |
|
OneToMany | |
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | TOR2 34 |
|
OneToMany |
- Species where no ortholog for BOLA2-SMG1P6 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- chimpanzee (Pan troglodytes)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- mouse (Mus musculus)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
Evolution for BOLA2-SMG1P6 Gene
- ENSEMBL:
- Gene Tree for BOLA2-SMG1P6 (if available)
- TreeFam:
- Gene Tree for BOLA2-SMG1P6 (if available)
Paralogs for BOLA2-SMG1P6 Gene
Pseudogenes.org Pseudogenes for BOLA2-SMG1P6 Gene
No data available for Paralogs for BOLA2-SMG1P6 Gene
Variants for BOLA2-SMG1P6 Gene
| SNP ID | Clin | Chr 16 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1002602928 | -- | 29,455,497(-) | C/T | upstream_transcript_variant | |
| rs1008372191 | -- | 29,446,746(-) | G/A | intron_variant | |
| rs1008405178 | -- | 29,449,167(-) | A/G | intron_variant | |
| rs1009879525 | -- | 29,449,556(-) | G/A | intron_variant | |
| rs1010324592 | -- | 29,452,474(-) | T/C | intron_variant |
Additional Variant Information for BOLA2-SMG1P6 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- BOLA2-SMG1P6
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BOLA2-SMG1P6 Gene
Disorders for BOLA2-SMG1P6 Gene
Additional Disease Information for BOLA2-SMG1P6
No disorders were found for BOLA2-SMG1P6 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BOLA2-SMG1P6 Gene
Publications for BOLA2-SMG1P6 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
- Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58
Products for BOLA2-SMG1P6 Gene
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- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for BOLA2-SMG1P6
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for BOLA2-SMG1P6
- Search GeneTex for Proteins for BOLA2-SMG1P6
- Search ViGene Biosciences for BOLA2-SMG1P6
Sources for BOLA2-SMG1P6 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
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- (114) diseasecard
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- (133) ENCODE
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- (135) Horizon
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- (139) VectorBuilder
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- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems