Aliases for BOK-AS1 Gene

Data sources for BOK-AS1 Gene:

Subcategory (RNA class) for BOK-AS1 Gene

lncRNA

Aliases for BOK-AS1 Gene

External Ids for BOK-AS1 Gene

Previous HGNC Symbols for BOK-AS1 Gene

  • BOKAS

Previous GeneCards Identifiers for BOK-AS1 Gene

  • GC02M242487

Summaries for BOK-AS1 Gene

GeneCards Summary for BOK-AS1 Gene

BOK-AS1 (BOK Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with BOK-AS1 include Testicular Cancer and Squamous Cell Carcinoma.

Additional gene information for BOK-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BOK-AS1 Gene

Genomics for BOK-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BOK-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BOK-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BOK-AS1 Gene

Latest Assembly
chr2:241,543,822-241,559,673
(GRCh38/hg38)
Size:
15,852 bases
Orientation:
Minus strand

Previous Assembly
chr2:242,483,799-242,498,558
(GRCh37/hg19 by Entrez Gene)
Size:
14,760 bases
Orientation:
Minus strand

chr2:242,483,818-242,498,392
(GRCh37/hg19 by Ensembl)
Size:
14,575 bases
Orientation:
Minus strand

Genomic View for BOK-AS1 Gene

Genes around BOK-AS1 on UCSC Golden Path with GeneCards custom track
BOK-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
BOK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BOK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BOK-AS1 Gene

Proteins for BOK-AS1 Gene

Post-translational modifications for BOK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BOK-AS1 Gene

Domains & Families for BOK-AS1 Gene

Gene Families for BOK-AS1 Gene

genes like me logo Genes that share domains with BOK-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BOK-AS1 Gene

Function for BOK-AS1 Gene

Phenotypes From GWAS Catalog for BOK-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BOK-AS1 Gene

Localization for BOK-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BOK-AS1 gene
Compartment Confidence
mitochondrion 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BOK-AS1 Gene

Pathways & Interactions for BOK-AS1 Gene

PathCards logo

SuperPathways for BOK-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BOK-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BOK-AS1 Gene

Drugs & Compounds for BOK-AS1 Gene

No Compound Related Data Available

Transcripts for BOK-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BOK-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000017AD75_9606 lncRNA 826 2

RefSeq: NR_033346,

ENA: FJ185168.1:1..849:ncRNA,

URS00001128C9_9606 lncRNA 645 2

Ensembl: ENST00000434306 (view in UCSC) ,

LNCipedia: BOK-AS1:3,

URS00008BD406_9606 lncRNA 826 3

LncBook: HSALNT0049937,

LNCipedia: BOK-AS1:2,

NONCODE: NONHSAT077943.2,

URS00008BAE02_9606 lncRNA 619 3

LncBook: HSALNT0049940,

LNCipedia: BOK-AS1:5,

NONCODE: NONHSAT077945.2,

URS00008B4949_9606 lncRNA 513 3

LncBook: HSALNT0049942,

LNCipedia: BOK-AS1:4,

NONCODE: NONHSAT077947.2,

BOK-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for BOK-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for BOK-AS1 Gene

No ASD Table

Relevant External Links for BOK-AS1 Gene

GeneLoc Exon Structure for
BOK-AS1

Expression for BOK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BOK-AS1 Gene

SOURCE GeneReport for Unigene cluster for BOK-AS1 Gene:

Hs.621128
genes like me logo Genes that share expression patterns with BOK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BOK-AS1 Gene

Orthologs for BOK-AS1 Gene

Evolution for BOK-AS1 Gene

ENSEMBL:
Gene Tree for BOK-AS1 (if available)
TreeFam:
Gene Tree for BOK-AS1 (if available)

No data available for Orthologs for BOK-AS1 Gene

Paralogs for BOK-AS1 Gene

No data available for Paralogs for BOK-AS1 Gene

Variants for BOK-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for BOK-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for BOK-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759120 CNV loss 17122850
esv3344058 CNV duplication 20981092
esv3561310 CNV deletion 23714750
esv3584397 CNV loss 25503493
nsv1138906 CNV deletion 24896259
nsv477170 CNV novel sequence insertion 20440878
nsv834588 CNV loss 17160897

Additional Variant Information for BOK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BOK-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for BOK-AS1 Gene

Disorders for BOK-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for BOK-AS1 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
testicular cancer
  • childhood neoplasm of the testis
squamous cell carcinoma
  • epidermoid carcinoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for BOK-AS1

genes like me logo Genes that share disorders with BOK-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BOK-AS1 Gene

Publications for BOK-AS1 Gene

  1. A natural antisense transcript, BOKAS, regulates the pro-apoptotic activity of human Bok. (PMID: 19287972) Zhang H … De Geyter C (International journal of oncology 2009) 2 3 74
  2. Targeting WISP1 to sensitize esophageal squamous cell carcinoma to irradiation. (PMID: 25749038) Zhang H … Wu S (Oncotarget 2015) 74
  3. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3

Products for BOK-AS1 Gene

Sources for BOK-AS1 Gene