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Aliases for BNIP1 Gene

Aliases for BNIP1 Gene

  • BCL2 Interacting Protein 1 2 3 5
  • BCL2/Adenovirus E1B 19 KDa Protein-Interacting Protein 1 3 4
  • BCL2/Adenovirus E1B 19kDa Interacting Protein 1 2 3
  • Transformation-Related Gene 8 Protein 3 4
  • TRG-8 3 4
  • NIP1 3 4
  • Vesicle Transport Protein SEC20 3
  • SEC20L 4
  • SEC20 3

External Ids for BNIP1 Gene

Previous GeneCards Identifiers for BNIP1 Gene

  • GC05P172829
  • GC05P173273
  • GC05P172507
  • GC05P172552
  • GC05P172504
  • GC05P167665

Summaries for BNIP1 Gene

Entrez Gene Summary for BNIP1 Gene

  • This gene is a member of the BCL2/adenovirus E1B 19 kd-interacting protein (BNIP) family. It interacts with the E1B 19 kDa protein, which protects cells from virally-induced cell death. The encoded protein also interacts with E1B 19 kDa-like sequences of BCL2, another apoptotic protector. In addition, this protein is involved in vesicle transport into the endoplasmic reticulum. Alternative splicing of this gene results in four protein products with identical N- and C-termini. [provided by RefSeq, Mar 2011]

GeneCards Summary for BNIP1 Gene

BNIP1 (BCL2 Interacting Protein 1) is a Protein Coding gene. Among its related pathways are Golgi-to-ER retrograde transport and Vesicle-mediated transport. Gene Ontology (GO) annotations related to this gene include SNAP receptor activity.

UniProtKB/Swiss-Prot for BNIP1 Gene

  • SNARE that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. Required for maintenance of ER network. Implicated in the suppression of cell death. May be involved in mitochondrial autophagy.

Additional gene information for BNIP1 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BNIP1 Gene

Genomics for BNIP1 Gene

GeneHancer (GH) Regulatory Elements for BNIP1 Gene

Promoters and enhancers for BNIP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I173143 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 559 +0.3 298 1.7 CLOCK DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 SSRP1 ZNF610 BNIP1 ENSG00000253172 UBTD2 CREBRF SH3PXD2B GC05P173099
GH05I172894 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 20.8 -243.5 -243494 12.7 CLOCK MLX FEZF1 IRF4 YY1 E2F8 ZNF416 MEF2D SSRP1 GLIS1 BOD1 BNIP1 UBTD2 ERGIC1 DUSP1 FBXW11 ENSG00000253445 LOC105377730 LOC401218 SH3PXD2B
GH05I173055 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 16.4 -87.5 -87460 3 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 CREBRF BNIP1 BOD1 SH3PXD2B CDC42P5
GH05I173322 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 9.8 +183.2 183162 9.6 CLOCK MLX FEZF1 DMAP1 IRF4 SLC30A9 ZNF213 ZNF143 ZNF263 SP3 STC2 SH3PXD2B BOD1 LOC100268168 RNU6-500P LOC285593 BNIP1 CREBRF GC05M173296 GC05P173099
GH05I173050 Enhancer 0.7 ENCODE 27.1 -93.1 -93089 2.6 PKNOX1 SIN3A GATA3 RCOR1 SMARCE1 STAT1 CEBPB DACH1 USF2 MNT ENSG00000207210 GC05M173053 BNIP1 SNORA74B ENSG00000254328 ATP6V0E1 ENSG00000253172 GC05P173039
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BNIP1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the BNIP1 gene promoter:

Genomic Locations for BNIP1 Gene

Genomic Locations for BNIP1 Gene
chr5:173,144,442-173,164,387
(GRCh38/hg38)
Size:
19,946 bases
Orientation:
Plus strand
chr5:172,571,445-172,591,390
(GRCh37/hg19)

Genomic View for BNIP1 Gene

Genes around BNIP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BNIP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BNIP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BNIP1 Gene

Proteins for BNIP1 Gene

  • Protein details for BNIP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q12981-SEC20_HUMAN
    Recommended name:
    Vesicle transport protein SEC20
    Protein Accession:
    Q12981
    Secondary Accessions:
    • D3DQM3
    • D3DQM4
    • D3DQM5
    • D3DQM6
    • O75622
    • O75623
    • O75624
    • Q6K044
    • Q96FG4

    Protein attributes for BNIP1 Gene

    Size:
    228 amino acids
    Molecular mass:
    26132 Da
    Quaternary structure:
    • Component of a SNARE complex consisting of STX18, USE1L, BNIP1/SEC20L and SEC22B. Interacts directly with STX18, RINT1/TIP20L and NAPA. Interacts with ZW10 through RINT1. Interacts with BCL2 and adenovirus E1B 19 kDa protein.
    Miscellaneous:
    • Silencing of BNIP1 disrupts ER morphology.

    Alternative splice isoforms for BNIP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BNIP1 Gene

Post-translational modifications for BNIP1 Gene

  • Lys-63-linked polyubiquitination by RNF185 allows recruiting of autophagy receptor SQSTM1, which simultaneously binds both ubiquitin and LC3 to link ubiquitination and autophagy.
  • Ubiquitination at Lys221
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for BNIP1 Gene

Domains & Families for BNIP1 Gene

Gene Families for BNIP1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for BNIP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for BNIP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q12981

UniProtKB/Swiss-Prot:

SEC20_HUMAN :
  • Belongs to the SEC20 family.
Family:
  • Belongs to the SEC20 family.
genes like me logo Genes that share domains with BNIP1: view

Function for BNIP1 Gene

Molecular function for BNIP1 Gene

UniProtKB/Swiss-Prot Function:
SNARE that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. Required for maintenance of ER network. Implicated in the suppression of cell death. May be involved in mitochondrial autophagy.

Phenotypes From GWAS Catalog for BNIP1 Gene

Gene Ontology (GO) - Molecular Function for BNIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005484 SNAP receptor activity IDA 15272311
GO:0005515 protein binding IPI 7954800
genes like me logo Genes that share ontologies with BNIP1: view
genes like me logo Genes that share phenotypes with BNIP1: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BNIP1 Gene

Localization for BNIP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BNIP1 Gene

Mitochondrion. Endoplasmic reticulum membrane; Single-pass type IV membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BNIP1 gene
Compartment Confidence
mitochondrion 5
nucleus 5
endoplasmic reticulum 5
cytosol 2
peroxisome 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Endoplasmic reticulum (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for BNIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005635 nuclear envelope IDA 7954800
GO:0005737 cytoplasm IDA 7954800
GO:0005739 mitochondrion IEA --
GO:0005783 endoplasmic reticulum IDA,IEA 15272311
GO:0005789 endoplasmic reticulum membrane TAS --
genes like me logo Genes that share ontologies with BNIP1: view

Pathways & Interactions for BNIP1 Gene

genes like me logo Genes that share pathways with BNIP1: view

Gene Ontology (GO) - Biological Process for BNIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER TAS --
GO:0006914 autophagy IEA --
GO:0006915 apoptotic process IPI 7954800
GO:0007029 endoplasmic reticulum organization IMP 15272311
genes like me logo Genes that share ontologies with BNIP1: view

No data available for SIGNOR curated interactions for BNIP1 Gene

Drugs & Compounds for BNIP1 Gene

No Compound Related Data Available

Transcripts for BNIP1 Gene

Unigene Clusters for BNIP1 Gene

BCL2/adenovirus E1B 19kDa interacting protein 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BNIP1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c
SP1: -
SP2: - -
SP3: - -
SP4: - - -
SP5:

Relevant External Links for BNIP1 Gene

GeneLoc Exon Structure for
BNIP1
ECgene alternative splicing isoforms for
BNIP1

Expression for BNIP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BNIP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for BNIP1 Gene

This gene is overexpressed in Cervix (17.2), Pancreas (7.8), and Bone (6.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for BNIP1 Gene



Protein tissue co-expression partners for BNIP1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of BNIP1 Gene:

BNIP1

SOURCE GeneReport for Unigene cluster for BNIP1 Gene:

Hs.145726

mRNA Expression by UniProt/SwissProt for BNIP1 Gene:

Q12981-SEC20_HUMAN
Tissue specificity: Isoform 1 is highly expressed in heart, brain, liver skeletal muscle and pancreas. Isoform 3 is moderately expressed in placenta, lung and kidney. Isoform 4 is highly expressed in testis and small intestine.

Evidence on tissue expression from TISSUES for BNIP1 Gene

  • Liver(4.2)
  • Kidney(4.1)
genes like me logo Genes that share expression patterns with BNIP1: view

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for BNIP1 Gene

Orthologs for BNIP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for BNIP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BNIP1 33 34
  • 99.71 (n)
dog
(Canis familiaris)
Mammalia BNIP1 33 34
  • 91.81 (n)
cow
(Bos Taurus)
Mammalia BNIP1 33 34
  • 89.62 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 89 (a)
OneToMany
-- 34
  • 87 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia BNIP1 34
  • 89 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Bnip1 33
  • 86.99 (n)
mouse
(Mus musculus)
Mammalia Bnip1 33 16 34
  • 86.55 (n)
chicken
(Gallus gallus)
Aves BNIP1 33 34
  • 75.04 (n)
lizard
(Anolis carolinensis)
Reptilia BNIP1 34
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bnip1 33
  • 71.07 (n)
African clawed frog
(Xenopus laevis)
Amphibia MGC64539 33
zebrafish
(Danio rerio)
Actinopterygii bnip1a 34
  • 74 (a)
OneToMany
bnip1b 33 34
  • 71.2 (n)
Dr.15880 33
fruit fly
(Drosophila melanogaster)
Insecta CG2023 33 34
  • 48.88 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000242 33
  • 46.86 (n)
Species where no ortholog for BNIP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BNIP1 Gene

ENSEMBL:
Gene Tree for BNIP1 (if available)
TreeFam:
Gene Tree for BNIP1 (if available)

Paralogs for BNIP1 Gene

No data available for Paralogs for BNIP1 Gene

Variants for BNIP1 Gene

Sequence variations from dbSNP and Humsavar for BNIP1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000062343 -- 173,144,765(+) CCCCCCC/CCCCCC/CCCCCCCC intron_variant
rs1000115264 -- 173,152,034(+) C/A intron_variant
rs1000119086 -- 173,143,766(+) G/C/T upstream_transcript_variant
rs1000153758 -- 173,153,313(+) T/C intron_variant
rs1000436140 -- 173,146,191(+) A/G intron_variant

Variation tolerance for BNIP1 Gene

Residual Variation Intolerance Score: 54.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.86; 17.99% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for BNIP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BNIP1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for BNIP1 Gene

Disorders for BNIP1 Gene

Additional Disease Information for BNIP1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for BNIP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BNIP1 Gene

Publications for BNIP1 Gene

  1. Involvement of BNIP1 in apoptosis and endoplasmic reticulum membrane fusion. (PMID: 15272311) Nakajima K … Tagaya M (The EMBO journal 2004) 2 3 4 58
  2. Adenovirus E1B 19 kDa and Bcl-2 proteins interact with a common set of cellular proteins. (PMID: 7954800) Boyd JM … Chinnadurai G (Cell 1994) 2 3 4 58
  3. Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis. (PMID: 22306654) Feenstra B … Melbye M (Nature genetics 2012) 3 44 58
  4. RNF185, a novel mitochondrial ubiquitin E3 ligase, regulates autophagy through interaction with BNIP1. (PMID: 21931693) Tang F … Tang J (PloS one 2011) 3 4 58
  5. Polymorphisms in mitochondrial genes and prostate cancer risk. (PMID: 19064571) Wang L … Thibodeau SN (Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2008) 3 44 58

Products for BNIP1 Gene

Sources for BNIP1 Gene

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