Aliases for BNC2-AS1 Gene

Data sources for BNC2-AS1 Gene:

RNA type for BNC2-AS1 Gene

lncRNA

Aliases for BNC2-AS1 Gene

External Ids for BNC2-AS1 Gene

Summaries for BNC2-AS1 Gene

GeneCards Summary for BNC2-AS1 Gene

BNC2-AS1 (BNC2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with BNC2-AS1 include Glioma Susceptibility 1 and Gastric Cancer.

Additional gene information for BNC2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BNC2-AS1 Gene

Genomics for BNC2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BNC2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J016725 Promoter/Enhancer 2.4 UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 256.4 +0.4 396 3.8 ZNF600 ZNF10 POLR2A CEBPB ZNF341 MAX SIN3A RAD21 SMC3 TBP BNC2-AS1 BNC2 piR-57460-662
GH09J016680 Enhancer 1.3 UCNEbase Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 -44.9 -44904 2.8 PRDM6 ZBTB48 ZNF398 GATA2 TRIM28 OSR2 ZBTB20 BNC2-AS1 BNC2 RF00017-6872 lnc-CNTLN-6 HSALNG0070210 lnc-C9orf92-4
GH09J016679 Enhancer 1.1 UCNEbase Ensembl ENCODE CraniofacialAtlas 11.6 -47.2 -47203 1.4 ATF2 POLR2A CHD2 BNC2-AS1 BNC2 RF00017-6872 lnc-CNTLN-6 lnc-C9orf92-4 HSALNG0070210
GH09J016808 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.1 +83.9 83895 4.4 POLR2A YY1 TAF1 SP1 POU5F1 ZBTB8A HLF NANOG BACH1 EP300 BNC2 BNC2-AS1 piR-44878-056 FJ601678-135
GH09J016707 Enhancer 1.6 VISTA UCNEbase ENCODE CraniofacialAtlas dbSUPER 5.1 -17.0 -17006 4.8 SIN3A MAFF MAFK TAF1 SP1 POU5F1 NANOG POLR2A BACH1 CEBPB BNC2-AS1 lnc-CNTLN-6 HSALNG0070210 lnc-C9orf92-4 BNC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BNC2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BNC2-AS1 Gene

Latest Assembly
chr9:16,726,705-16,727,744
(GRCh38/hg38)
Size:
1,040 bases
Orientation:
Plus strand

Previous Assembly
chr9:16,726,812-16,727,522
(GRCh37/hg19 by Entrez Gene)
Size:
711 bases
Orientation:
Plus strand

chr9:16,726,812-16,727,522
(GRCh37/hg19 by Ensembl)
Size:
711 bases
Orientation:
Plus strand

Genomic View for BNC2-AS1 Gene

Genes around BNC2-AS1 on UCSC Golden Path with GeneCards custom track
BNC2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
BNC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BNC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BNC2-AS1 Gene

Proteins for BNC2-AS1 Gene

Post-translational modifications for BNC2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BNC2-AS1 Gene

Domains & Families for BNC2-AS1 Gene

Gene Families for BNC2-AS1 Gene

genes like me logo Genes that share domains with BNC2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BNC2-AS1 Gene

Function for BNC2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BNC2-AS1 Gene

Localization for BNC2-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BNC2-AS1 gene
Compartment Confidence
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BNC2-AS1 Gene

Pathways & Interactions for BNC2-AS1 Gene

PathCards logo

SuperPathways for BNC2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BNC2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BNC2-AS1 Gene

Drugs & Compounds for BNC2-AS1 Gene

No Compound Related Data Available

Transcripts for BNC2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BNC2-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000009CB55_9606 lncRNA 428 4

RefSeq: NR_151723,

Ensembl: ENST00000450445 (view in UCSC) ,

LNCipedia: BNC2-AS1:14,

NONCODE: NONHSAT130293.2,

URS0000D59B29_9606 lncRNA 436 2

LncBook: HSALNT0147055,

LNCipedia: BNC2-AS1:9,

URS00009B8088_9606 lncRNA 428 2

LncBook: HSALNT0147058,

NONCODE: NONHSAT219251.1,

URS0000D5AD14_9606 lncRNA 395 2

LncBook: HSALNT0147059,

LNCipedia: BNC2-AS1:15,

URS0001BDED7F_9606 lncRNA 1003 1

LncBook: HSALNT0147052,

BNC2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for BNC2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for BNC2-AS1 Gene

No ASD Table

Relevant External Links for BNC2-AS1 Gene

GeneLoc Exon Structure for
BNC2-AS1

Expression for BNC2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BNC2-AS1 Gene

Orthologs for BNC2-AS1 Gene

Evolution for BNC2-AS1 Gene

ENSEMBL:
Gene Tree for BNC2-AS1 (if available)
TreeFam:
Gene Tree for BNC2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for BNC2-AS1

No data available for Orthologs for BNC2-AS1 Gene

Paralogs for BNC2-AS1 Gene

No data available for Paralogs for BNC2-AS1 Gene

Variants for BNC2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for BNC2-AS1 Gene

SNP ID Clinical significance and condition Chr 09 pos Variation AA Info Type
870151 Benign: Amelogenesis imperfecta 16,419,429(+) C/T
NM_017637.6(BNC2):c.2860G>A (p.Ala954Thr)
MISSENSE_VARIANT,THREE_PRIME_UTR

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for BNC2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for BNC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BNC2-AS1
Leiden Open Variation Database (LOVD)
BNC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BNC2-AS1 Gene

Disorders for BNC2-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for BNC2-AS1 Gene - From: LNC, COP, and GCD

Disorder Aliases PubMed IDs
glioma susceptibility 1
  • glm1
gastric cancer
  • gastric cancer, somatic
amelogenesis imperfecta
  • ai
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for BNC2-AS1

genes like me logo Genes that share disorders with BNC2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BNC2-AS1 Gene

Publications for BNC2-AS1 Gene

  1. Increased Expression of Long Noncoding RNA RP11-62F24.2 in Gastric Cancer and Its Clinical Significance. (PMID: 28879717) Liu C … Zhou P (Clinical laboratory 2017) 2 3
  2. Effect of lncRNA BNC2-AS1 on the Proliferation, Migration and Invasion of Gastric Cancer Cells. (PMID: 30549996) Liu C … Yang B (Clinical laboratory 2018) 3
  3. The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F … Yang Y (PloS one 2015) 72

Products for BNC2-AS1 Gene

Sources for BNC2-AS1 Gene