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Aliases for BNC2-AS1 Gene

Subcategory (RNA class) for BNC2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for BNC2-AS1 Gene

  • BNC2 Antisense RNA 1 2 3 5
  • RP11-62F24.2 3

External Ids for BNC2-AS1 Gene

Summaries for BNC2-AS1 Gene

GeneCards Summary for BNC2-AS1 Gene

BNC2-AS1 (BNC2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with BNC2-AS1 include Gastric Cancer.

Additional gene information for BNC2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BNC2-AS1 Gene

Genomics for BNC2-AS1 Gene

GeneHancer (GH) Regulatory Elements for BNC2-AS1 Gene

Promoters and enhancers for BNC2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J016725 Promoter/Enhancer 2.4 UCNEbase EPDnew Ensembl ENCODE dbSUPER 656.5 +0.3 286 2.8 ZSCAN4 MZF1 SIN3A ZNF2 RAD21 RCOR1 ZBTB11 CEBPB REST SP1 BNC2-AS1 BNC2 PIR38257
GH09J016679 Enhancer 1.1 UCNEbase Ensembl ENCODE 11.6 -47.1 -47101 0.5 POLR2A ATF7 RCOR1 ATF2 CHD2 BNC2-AS1 BNC2 GC09P016706 GC09P016632
GH09J016680 Enhancer 0.9 UCNEbase ENCODE 11.6 -45.5 -45483 1.6 OSR2 PRDM6 ZBTB48 ZNF398 BNC2-AS1 BNC2 GC09P016706 GC09P016632
GH09J016707 Enhancer 1.8 VISTA UCNEbase Ensembl ENCODE dbSUPER 5.1 -17.1 -17115 4.8 NANOG BACH1 SIN3A SP1 MAFF POLR2A POU5F1 MAFK PRDM1 BNC2-AS1 GC09P016706 GC09P016723 BNC2
GH09J016772 Enhancer 0.4 UCNEbase 11.2 +46.2 46187 0.4 BNC2-AS1 BNC2 GC09M016779 LSM1P1 PIR61295
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BNC2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BNC2-AS1 Gene

Genomic Locations for BNC2-AS1 Gene
chr9:16,726,814-16,727,524
(GRCh38/hg38)
Size:
711 bases
Orientation:
Plus strand
chr9:16,726,812-16,727,522
(GRCh37/hg19)

Genomic View for BNC2-AS1 Gene

Genes around BNC2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BNC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BNC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BNC2-AS1 Gene

Function for BNC2-AS1 Gene

Phenotypes From GWAS Catalog for BNC2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BNC2-AS1 Gene

Localization for BNC2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BNC2-AS1 Gene

Pathways & Interactions for BNC2-AS1 Gene

SuperPathways for BNC2-AS1 Gene

No Data Available

Interacting Proteins for BNC2-AS1 Gene

Gene Ontology (GO) - Biological Process for BNC2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BNC2-AS1 Gene

Drugs & Compounds for BNC2-AS1 Gene

No Compound Related Data Available

Transcripts for BNC2-AS1 Gene

mRNA/cDNA for BNC2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for BNC2-AS1 Gene

No ASD Table

Relevant External Links for BNC2-AS1 Gene

GeneLoc Exon Structure for
BNC2-AS1
ECgene alternative splicing isoforms for
BNC2-AS1

Expression for BNC2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BNC2-AS1 Gene

Orthologs for BNC2-AS1 Gene

Evolution for BNC2-AS1 Gene

ENSEMBL:
Gene Tree for BNC2-AS1 (if available)
TreeFam:
Gene Tree for BNC2-AS1 (if available)

No data available for Orthologs for BNC2-AS1 Gene

Paralogs for BNC2-AS1 Gene

No data available for Paralogs for BNC2-AS1 Gene

Variants for BNC2-AS1 Gene

Additional Variant Information for BNC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BNC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BNC2-AS1 Gene

Disorders for BNC2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for BNC2-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with BNC2-AS1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for BNC2-AS1 Gene

Publications for BNC2-AS1 Gene

  1. Increased Expression of Long Noncoding RNA RP11-62F24.2 in Gastric Cancer and Its Clinical Significance. (PMID: 28879717) Liu C … Zhou P (Clinical laboratory 2017) 2 3 58

Products for BNC2-AS1 Gene

Sources for BNC2-AS1 Gene

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