Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BMS1P4 Gene

Aliases for BMS1P4 Gene

  • BMS1, Ribosome Biogenesis Factor Pseudogene 4 2 3 5
  • BMS1L Pseudogene 4 2 3
  • BMS1 Pseudogene 4 2 3
  • BMS1 Homolog, Ribosome Assembly Protein Pseudogene 3
  • BMS1LP4 3

External Ids for BMS1P4 Gene

Previous HGNC Symbols for BMS1P4 Gene

  • BMS1LP4

Previous GeneCards Identifiers for BMS1P4 Gene

  • GC10U900833
  • GC10M075147
  • GC10M075459
  • GC10M069454
  • GC10M075461

Summaries for BMS1P4 Gene

GeneCards Summary for BMS1P4 Gene

BMS1P4 (BMS1, Ribosome Biogenesis Factor Pseudogene 4) is a Pseudogene.

Additional gene information for BMS1P4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BMS1P4 Gene

Genomics for BMS1P4 Gene

GeneHancer (GH) Regulatory Elements for BMS1P4 Gene

Promoters and enhancers for BMS1P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I073729 Promoter/Enhancer 1.6 Ensembl ENCODE 550.8 -0.3 -340 2.9 MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MEF2D SSRP1 BMS1P4 DUSP8P5 GLUD1P3 ENSG00000271816 ENSG00000242288 FUT11 VCL FAM149B1 PLAU ENSG00000224195
GH10I073250 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 29.1 +478.2 478180 3.5 HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ENSG00000227540 MRPS16 DNAJB12 NDST2 ZSWIM8 SEC24C AP3M1 ECD NUDT13 ENSG00000272140
GH10I074174 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 20.2 -446.5 -446524 5.5 CLOCK FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF263 SP3 NFYC ADK AP3M1 SEC24C GLUD1P3 ENSG00000272140 DUSP8P5 BMS1P4 NDST2 ZSWIM8 ZSWIM8-AS1
GH10I073243 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 21.6 +484.3 484261 5.5 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 DNAJC9 DNAJC9-AS1 SEC24C NDST2 ZSWIM8 NUDT13 DNAJB12 GLUD1P3 ZSWIM8-AS1 ENSG00000272140
GH10I073741 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 23 -13.1 -13091 4.1 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 SEC24C ENSG00000279088 GC10M073741 FUT11 ENSG00000272140 GLUD1P3 DUSP8P5 RPL17P50 AP3M1 BMS1P4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BMS1P4 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the BMS1P4 gene promoter:

Genomic Locations for BMS1P4 Gene

Genomic Locations for BMS1P4 Gene
chr10:73,699,151-73,730,514
(GRCh38/hg38)
Size:
31,364 bases
Orientation:
Minus strand
chr10:75,458,909-75,490,272
(GRCh37/hg19)

Genomic View for BMS1P4 Gene

Genes around BMS1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMS1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMS1P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMS1P4 Gene

Proteins for BMS1P4 Gene

Post-translational modifications for BMS1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BMS1P4 Gene

Domains & Families for BMS1P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BMS1P4 Gene

Function for BMS1P4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMS1P4 Gene

Localization for BMS1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BMS1P4 Gene

Pathways & Interactions for BMS1P4 Gene

SuperPathways for BMS1P4 Gene

No Data Available

Interacting Proteins for BMS1P4 Gene

Gene Ontology (GO) - Biological Process for BMS1P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BMS1P4 Gene

Drugs & Compounds for BMS1P4 Gene

No Compound Related Data Available

Transcripts for BMS1P4 Gene

mRNA/cDNA for BMS1P4 Gene

(6) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BMS1P4 Gene

BMS1 pseudogene 4:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BMS1P4 Gene

No ASD Table

Relevant External Links for BMS1P4 Gene

GeneLoc Exon Structure for
BMS1P4
ECgene alternative splicing isoforms for
BMS1P4

Expression for BMS1P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BMS1P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of BMS1P4 Gene:

BMS1P4

SOURCE GeneReport for Unigene cluster for BMS1P4 Gene:

Hs.709171
genes like me logo Genes that share expression patterns with BMS1P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BMS1P4 Gene

Orthologs for BMS1P4 Gene

Evolution for BMS1P4 Gene

ENSEMBL:
Gene Tree for BMS1P4 (if available)
TreeFam:
Gene Tree for BMS1P4 (if available)

No data available for Orthologs for BMS1P4 Gene

Paralogs for BMS1P4 Gene

No data available for Paralogs for BMS1P4 Gene

Variants for BMS1P4 Gene

Sequence variations from dbSNP and Humsavar for BMS1P4 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000050687 -- 73,701,579(-) G/C intron_variant
rs1000104499 -- 73,699,673(-) C/T intron_variant
rs1000116395 -- 73,730,263(-) T/C intron_variant
rs1000421918 -- 73,701,824(-) A/G intron_variant
rs1000613531 -- 73,731,360(-) TTTTTTTT/TTTTTTTTT upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for BMS1P4 Gene

Variant ID Type Subtype PubMed ID
esv24583 CNV loss 19812545
nsv1035634 CNV gain 25217958
nsv825468 CNV gain 20364138
nsv831912 CNV gain 17160897
nsv948068 CNV duplication 23825009
nsv948069 CNV duplication 23825009
nsv948070 CNV duplication 23825009

Additional Variant Information for BMS1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMS1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BMS1P4 Gene

Disorders for BMS1P4 Gene

Additional Disease Information for BMS1P4

No disorders were found for BMS1P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BMS1P4 Gene

Publications for BMS1P4 Gene

  1. Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms. (PMID: 11779832) Crosier M … Jackson MS (Genome research 2002) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for BMS1P4 Gene

Sources for BMS1P4 Gene

Content
Loading form....