This locus appears to be a transcribed pseudogene of the BMS1 homolog of yeast ribosome assembly protein on chromosome 10 that has arisen from duplication of the 3' half of the parent gene. Frameshifts and premature stop codons are present in this pseudogene compared to the parent gene. This gene lies in the immunoglobulin lambda gene cluster on chromosome 22q11.21.[provided by... See more...

Aliases for BMS1P20 Gene

Aliases for BMS1P20 Gene

  • BMS1 Pseudogene 20 2 3
  • BMS1, Ribosome Biogenesis Factor Pseudogene 20 2 3
  • Anti-SARS-CoV-2 Spike Protein Immunoglobulin Light Chain Variable Region 3
  • Anti-SARS-CoV-2 Immunoglobulin Light Chain Variable Region 3
  • BMS1 Homolog, Ribosome Assembly Protein Pseudogene 3
  • Immunoglobulin Light Chain Variable Region 3
  • Immunogloblin Light Chain Variable Region 3
  • Anti-HIV-1 V3 Immunoglobulin Light Chain 3
  • Immunoglobulin Lambda-1 Variable Region 3
  • Immunoglobulin Heavy Chain V Region 3
  • IGL C1397_light_IGLV1-51_IGLJ2 3
  • IGL C1510_light_IGLV1-51_IGLJ2 3
  • IGL C1532_light_IGLV1-51_IGLJ2 3
  • IGL C1535_light_IGLV1-51_IGLJ2 3
  • IGL C1574_light_IGLV1-51_IGLJ2 3
  • IGL C1630_light_IGLV1-51_IGLJ3 3
  • IGL C1876_light_IGLV1-51_IGLJ2 3
  • IGL C1911_light_IGLV1-51_IGLJ2 3
  • IGL C1953_light_IGLV1-51_IGLJ2 3
  • IGL C2014_light_IGLV1-51_IGLJ2 3
  • IGL C2090_light_IGLV1-51_IGLJ2 3
  • IGL C2102_light_IGLV1-51_IGLJ2 3
  • IGL C2114_light_IGLV1-51_IGLJ2 3
  • IGL C2119_light_IGLV1-51_IGLJ2 3
  • IGL C2212_light_IGLV1-51_IGLJ2 3
  • IGL C2411_light_IGLV1-51_IGLJ2 3
  • IGL C3648_light_IGLV1-51_IGLJ2 3
  • IGL C3772_light_IGLV1-51_IGLJ2 3
  • IGL C3921_light_IGLV1-51_IGLJ2 3
  • IGL C3948_light_IGLV1-51_IGLJ2 3
  • IGL C4094_light_IGLV1-51_IGLJ2 3
  • IG C1003_light_IGLV1-51_IGLJ2 3
  • IG C1150_light_IGLV1-51_IGLJ2 3
  • IG C1279_light_IGLV1-51_IGLJ2 3
  • IG C1343_light_IGLV1-51_IGLJ2 3
  • IG C1418_light_IGLV1-51_IGLJ2 3
  • IGL C209_light_IGLV1-51_IGLJ3 3
  • IGL C331_light_IGLV1-51_IGLJ2 3
  • IGL C369_light_IGLV1-51_IGLJ3 3
  • IGL C699_light_IGLV1-51_IGLJ3 3
  • IGL C869_light_IGLV1-51_IGLJ3 3
  • IG C137_light_IGLV1-51_IGLJ2 3
  • IG C345_light_IGLV1-51_IGLJ2 3
  • IG C363_light_IGLV1-51_IGLJ2 3
  • IG C497_light_IGLV1-51_IGLJ2 3
  • IG C703_light_IGLV1-51_IGLJ2 3
  • IG C833_light_IGLV1-51_IGLJ3 3
  • IGL C31_light_IGLV1-51_IGLJ2 3
  • Immunoglobulin Lamda Chain 3
  • Immunoglobulin V Region 3
  • IGLV1 3
  • IGLV 3
  • IGL 3

External Ids for BMS1P20 Gene

Previous GeneCards Identifiers for BMS1P20 Gene

  • GC22P022667
  • GC22P022669

Summaries for BMS1P20 Gene

Entrez Gene Summary for BMS1P20 Gene

  • This locus appears to be a transcribed pseudogene of the BMS1 homolog of yeast ribosome assembly protein on chromosome 10 that has arisen from duplication of the 3' half of the parent gene. Frameshifts and premature stop codons are present in this pseudogene compared to the parent gene. This gene lies in the immunoglobulin lambda gene cluster on chromosome 22q11.21.[provided by RefSeq, Mar 2009]

GeneCards Summary for BMS1P20 Gene

BMS1P20 (BMS1 Pseudogene 20) is a Pseudogene. Diseases associated with BMS1P20 include Lung Cancer Susceptibility 3.

Additional gene information for BMS1P20 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BMS1P20 Gene

Genomics for BMS1P20 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around BMS1P20 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BMS1P20 Gene

Latest Assembly
chr22:22,298,098-22,322,968
(GRCh38/hg38)
Size:
24,871 bases
Orientation:
Plus strand

Previous Assembly
chr22:22,652,463-22,677,324
(GRCh37/hg19 by Entrez Gene)
Size:
24,862 bases
Orientation:
Plus strand

Genomic View for BMS1P20 Gene

Genes around BMS1P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMS1P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMS1P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMS1P20 Gene

Proteins for BMS1P20 Gene

Post-translational modifications for BMS1P20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BMS1P20 Gene

Domains & Families for BMS1P20 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BMS1P20 Gene

Function for BMS1P20 Gene

Phenotypes for BMS1P20 Gene

GenomeRNAi human phenotypes for BMS1P20:
genes like me logo Genes that share phenotypes with BMS1P20: view

Animal Models for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMS1P20 Gene

Localization for BMS1P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BMS1P20 Gene

Pathways & Interactions for BMS1P20 Gene

PathCards logo

SuperPathways for BMS1P20 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BMS1P20 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BMS1P20 Gene

Drugs & Compounds for BMS1P20 Gene

No Compound Related Data Available

Transcripts for BMS1P20 Gene

mRNA/cDNA for BMS1P20 Gene

1 REFSEQ mRNAs :
81 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for BMS1P20 Gene

No ASD Table

Relevant External Links for BMS1P20 Gene

GeneLoc Exon Structure for
BMS1P20

Expression for BMS1P20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BMS1P20 Gene

Protein differential expression in normal tissues from HIPED for BMS1P20 Gene

This gene is overexpressed in Urine (50.7) and Serum (18.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for BMS1P20 Gene



Protein tissue co-expression partners for BMS1P20 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BMS1P20

genes like me logo Genes that share expression patterns with BMS1P20: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BMS1P20 Gene

Orthologs for BMS1P20 Gene

No data available for Orthologs and Evolution for BMS1P20 Gene

Paralogs for BMS1P20 Gene

No data available for Paralogs for BMS1P20 Gene

Variants for BMS1P20 Gene

Structural Variations from Database of Genomic Variants (DGV) for BMS1P20 Gene

Variant ID Type Subtype PubMed ID
dgv1295e212 CNV gain 25503493
dgv22e196 CNV deletion 17116639
dgv2598e59 CNV duplication 20981092
dgv37n64 CNV loss 17921354
dgv4504n100 CNV gain 25217958
dgv4505n100 CNV loss 25217958
dgv548n27 CNV loss 19166990
dgv731n67 CNV loss 20364138
dgv826e214 CNV loss 21293372
esv2422480 CNV deletion 17116639
esv2507410 CNV loss 19546169
esv3369337 CNV duplication 20981092
esv33844 CNV gain 17666407
esv3647351 CNV loss 21293372
esv3647352 CNV gain 21293372
esv3893447 CNV gain 25118596
nsv1058897 CNV loss 25217958
nsv1076537 CNV duplication 25765185
nsv1123579 CNV deletion 24896259
nsv1141415 CNV duplication 24896259
nsv1146169 CNV duplication 26484159
nsv459421 CNV gain 19166990
nsv459450 CNV loss 19166990
nsv469749 CNV loss 16826518
nsv526328 CNV gain 19592680
nsv588348 CNV gain 21841781
nsv588391 CNV loss 21841781
nsv7350 OTHER inversion 18451855
nsv817937 CNV loss 17921354
nsv817943 CNV loss 17921354
nsv820089 CNV gain 19587683
nsv828977 CNV loss 20364138
nsv828979 CNV gain+loss 20364138
nsv834147 CNV loss 17160897
nsv953047 CNV duplication 24416366
nsv962845 CNV duplication 23825009
nsv962846 CNV duplication 23825009
nsv964596 CNV duplication 23825009

Additional Variant Information for BMS1P20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMS1P20
Leiden Open Variation Database (LOVD)
BMS1P20

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for BMS1P20 Gene

Disorders for BMS1P20 Gene

MalaCards: The human disease database

(1) MalaCards diseases for BMS1P20 Gene - From: LNC

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for BMS1P20

genes like me logo Genes that share disorders with BMS1P20: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BMS1P20 Gene

Publications for BMS1P20 Gene

  1. Rapid isolation and profiling of a diverse panel of human monoclonal antibodies targeting the SARS-CoV-2 spike protein. (PMID: 32511414) Zost SJ … Crowe JE (bioRxiv : the preprint server for biology 2020) 3
  2. A Potent Anti-Malarial Human Monoclonal Antibody Targets Circumsporozoite Protein Minor Repeats and Neutralizes Sporozoites in the Liver. (PMID: 32946741) Wang LT … Seder RA (Immunity 2020) 3
  3. Longitudinal dynamics of the human B cell response to the yellow fever 17D vaccine. (PMID: 32152119) Wec AZ … Walker LM (Proceedings of the National Academy of Sciences of the United States of America 2020) 3
  4. Exposure of an occluded hemagglutinin epitope drives selection of a class of cross-protective influenza antibodies. (PMID: 31462639) Adachi Y … Takahashi Y (Nature communications 2019) 3
  5. Longitudinal Analysis of the Human B Cell Response to Ebola Virus Infection. (PMID: 31104840) Davis CW … Ahmed R (Cell 2019) 3

Products for BMS1P20 Gene

Sources for BMS1P20 Gene