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Aliases for BMS1P2 Gene

Aliases for BMS1P2 Gene

  • BMS1, Ribosome Biogenesis Factor Pseudogene 2 2 3 5
  • BMS1, Ribosome Biogenesis Factor Pseudogene 6 2 3
  • BMS1L Pseudogene 2 2 3
  • BMS1L Pseudogene 6 2 3
  • BMS1 Homolog, Ribosome Assembly Protein Pseudogene 3
  • BMS1-Like, Ribosome Assembly Protein Pseudogene 3
  • BMS1 Pseudogene 2 2
  • BMS1 Pseudogene 6 2
  • BA144G6.1 3
  • BMS1LP2 3
  • BMS1LP6 3
  • BMS1P6 3

External Ids for BMS1P2 Gene

Previous HGNC Symbols for BMS1P2 Gene

  • BMS1LP2
  • BMS1P6
  • BMS1LP6

Previous GeneCards Identifiers for BMS1P2 Gene

  • GC10U900832
  • GC10M046651
  • GC10M047192
  • GC10M047228
  • GC10P046787

Summaries for BMS1P2 Gene

GeneCards Summary for BMS1P2 Gene

BMS1P2 (BMS1, Ribosome Biogenesis Factor Pseudogene 2) is a Pseudogene.

Additional gene information for BMS1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BMS1P2 Gene

Genomics for BMS1P2 Gene

GeneHancer (GH) Regulatory Elements for BMS1P2 Gene

Promoters and enhancers for BMS1P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I047552 Promoter 1.2 Ensembl 635.4 +0.0 22 1.8 PKNOX1 ZNF493 ZFP64 ZNF121 POLR2B ZNF213 ZNF214 ZNF202 REST ZNF623 BMS1P2 ENSG00000254929 BMS1P1 AGAP9 LOC105378289 MAPK8 RNA5SP312 ANXA8
GH10I046555 Enhancer 1.1 Ensembl ENCODE dbSUPER 42.7 +996.8 996834 2.9 HDGF MXI1 USF1 BACH1 ZNF175 SIN3A GLI4 ZIC2 ZFHX2 ZNF791 GPRIN2 PARGP1 BMS1P1 BMS1P2 AGAP9 AGAP4 WASHC2C AGAP10P LOC105378289 ZFAND4
GH10I047401 Enhancer 1.2 Ensembl ENCODE 23 +148.2 148237 8.4 PKNOX1 CLOCK ATF1 ARNT ZNF133 SIN3A GLI4 ZNF2 ZBTB7B BRCA1 AGAP9 BMS1P2 LOC105378289 BMS1P1 MAPK8 PTPN20 LOC105378292 ZNF488
GH10I048385 Enhancer 0.7 ENCODE 27.6 -831.2 -831190 0.2 ZNF174 SMAD1 NFIA NFIB ZIK1 ZNF195 DPF2 ZNF491 NCOA2 LCORL BMS1P2 AGAP9 MAPK8 ENSG00000279822
GH10I048465 Enhancer 1.4 Ensembl ENCODE dbSUPER 13.6 -915.4 -915379 6.1 HDGF PKNOX1 SMAD1 ARNT FEZF1 YY1 POLR2B ZNF766 CBX5 E2F8 AGAP9 BMS1P2 ARHGAP22 AGAP12P BMS1P7 ENSG00000279822 ARHGAP22-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BMS1P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BMS1P2 Gene

Genomic Locations for BMS1P2 Gene
chr10:47,535,574-47,553,523
(GRCh38/hg38)
Size:
17,950 bases
Orientation:
Minus strand
chr10:47,228,366-47,241,942
(GRCh37/hg19)

Genomic View for BMS1P2 Gene

Genes around BMS1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMS1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMS1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMS1P2 Gene

Proteins for BMS1P2 Gene

Post-translational modifications for BMS1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BMS1P2 Gene

Domains & Families for BMS1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BMS1P2 Gene

Function for BMS1P2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMS1P2 Gene

Localization for BMS1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BMS1P2 Gene

Pathways & Interactions for BMS1P2 Gene

SuperPathways for BMS1P2 Gene

No Data Available

Interacting Proteins for BMS1P2 Gene

Gene Ontology (GO) - Biological Process for BMS1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BMS1P2 Gene

Drugs & Compounds for BMS1P2 Gene

No Compound Related Data Available

Transcripts for BMS1P2 Gene

mRNA/cDNA for BMS1P2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BMS1P2 Gene

No ASD Table

Relevant External Links for BMS1P2 Gene

GeneLoc Exon Structure for
BMS1P2
ECgene alternative splicing isoforms for
BMS1P2

Expression for BMS1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BMS1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of BMS1P2 Gene:

BMS1P2
genes like me logo Genes that share expression patterns with BMS1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BMS1P2 Gene

Orthologs for BMS1P2 Gene

Evolution for BMS1P2 Gene

ENSEMBL:
Gene Tree for BMS1P2 (if available)
TreeFam:
Gene Tree for BMS1P2 (if available)

No data available for Orthologs for BMS1P2 Gene

Paralogs for BMS1P2 Gene

No data available for Paralogs for BMS1P2 Gene

Variants for BMS1P2 Gene

Sequence variations from dbSNP and Humsavar for BMS1P2 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1046757 -- 47,537,607(-) T/C non_coding_transcript_variant
rs112356944 -- 47,549,487(-) C/T intron_variant
rs113565478 -- 47,544,077(-) C/T intron_variant
rs113699210 -- 47,539,867(-) A/C intron_variant
rs1807444 -- 47,539,446(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BMS1P2 Gene

Variant ID Type Subtype PubMed ID
dgv137e199 CNV deletion 23128226
dgv443n106 CNV deletion 24896259
nsv1068309 CNV deletion 25765185
nsv550805 CNV loss 21841781
nsv821424 CNV duplication 20802225
nsv971755 CNV duplication 23825009

Additional Variant Information for BMS1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMS1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BMS1P2 Gene

Disorders for BMS1P2 Gene

No disorders were found for BMS1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BMS1P2 Gene

Publications for BMS1P2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58
  4. Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms. (PMID: 11779832) Crosier M … Jackson MS (Genome research 2002) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for BMS1P2 Gene

Sources for BMS1P2 Gene

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