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Aliases for BMS1P1 Gene

Aliases for BMS1P1 Gene

  • BMS1, Ribosome Biogenesis Factor Pseudogene 1 2 3 5
  • BMS1, Ribosome Biogenesis Factor Pseudogene 5 2 3
  • BMS1L Pseudogene 1 2 3
  • BMS1L Pseudogene 5 2 3
  • BMS1 Pseudogene 1 2
  • BMS1 Pseudogene 5 2
  • BMS1LP1 3
  • BMS1LP5 3
  • BMS1P5 3

External Ids for BMS1P1 Gene

Previous HGNC Symbols for BMS1P1 Gene

  • BMS1LP1
  • BMS1P5
  • BMS1LP5

Previous GeneCards Identifiers for BMS1P1 Gene

  • GC10M046160
  • GC10M046732
  • GC10M043574

Summaries for BMS1P1 Gene

GeneCards Summary for BMS1P1 Gene

BMS1P1 (BMS1, Ribosome Biogenesis Factor Pseudogene 1) is a Pseudogene.

Additional gene information for BMS1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BMS1P1 Gene

Genomics for BMS1P1 Gene

GeneHancer (GH) Regulatory Elements for BMS1P1 Gene

Promoters and enhancers for BMS1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J046786 Promoter 1 Ensembl 665.4 +0.2 227 1.8 HDAC1 PKNOX1 ZBTB40 CC2D1A ZNF335 ZFHX2 POLR2B POLR2A PHF20 ZSCAN29 BMS1P1 GC10M046782 PIR62612 GLUD1P2 PARGP1 AGAP9 BMS1P2 PIR34351
GH10J046522 Enhancer 1.3 Ensembl ENCODE 157.5 -262.0 -261976 3.6 HDGF ARNT SIN3A YBX1 ZNF2 ZBTB7B ZNF766 ZNF143 ZNF207 FOS PARGP1 AGAP4 BMS1P1 AGAP9 WASHC2C LOC105378289 AGAP10P FAM21FP ZFAND4 FAM35BP
GH10J047552 Promoter 1.2 Ensembl 80.3 +766.8 766827 1.8 HDAC1 PKNOX1 ZNF493 ZFP64 ZBTB40 ZNF335 ZNF121 POLR2B ZNF213 ZNF202 BMS1P2 ENSG00000254929 BMS1P1 AGAP9 LOC105378289 MAPK8 RNA5SP312 ANXA8
GH10J046555 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 54 -230.0 -229985 2.9 HDGF MXI1 USF1 BACH1 ZNF175 SIN3A GLI4 ZIC2 ZFHX2 ZNF791 GPRIN2 NPY4R PARGP1 BMS1P1 BMS1P2 AGAP9 AGAP4 WASHC2C AGAP10P LOC105378289
GH10J047401 Enhancer 1.2 Ensembl ENCODE 22.3 +618.6 618612 8.4 PKNOX1 CLOCK ATF1 ARNT ZNF133 SIN3A GLI4 ZNF2 ZBTB7B BRCA1 AGAP9 BMS1P2 LOC105378289 BMS1P1 MAPK8 PTPN20 LOC105378292 ZNF488
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BMS1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BMS1P1 Gene

Genomic Locations for BMS1P1 Gene
chr10:46,786,674-46,811,989
(GRCh38/hg38)
Size:
25,316 bases
Orientation:
Plus strand
chr10:46,737,612-46,762,892
(GRCh37/hg19)

Genomic View for BMS1P1 Gene

Genes around BMS1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMS1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMS1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMS1P1 Gene

Function for BMS1P1 Gene

Phenotypes for BMS1P1 Gene

genes like me logo Genes that share phenotypes with BMS1P1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMS1P1 Gene

Localization for BMS1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BMS1P1 Gene

Pathways & Interactions for BMS1P1 Gene

SuperPathways for BMS1P1 Gene

No Data Available

Interacting Proteins for BMS1P1 Gene

Gene Ontology (GO) - Biological Process for BMS1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BMS1P1 Gene

Drugs & Compounds for BMS1P1 Gene

No Compound Related Data Available

Transcripts for BMS1P1 Gene

mRNA/cDNA for BMS1P1 Gene

(104) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BMS1P1 Gene

No ASD Table

Relevant External Links for BMS1P1 Gene

GeneLoc Exon Structure for
BMS1P1
ECgene alternative splicing isoforms for
BMS1P1

Expression for BMS1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BMS1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of BMS1P1 Gene:

BMS1P1
genes like me logo Genes that share expression patterns with BMS1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BMS1P1 Gene

Orthologs for BMS1P1 Gene

Evolution for BMS1P1 Gene

ENSEMBL:
Gene Tree for BMS1P1 (if available)
TreeFam:
Gene Tree for BMS1P1 (if available)

No data available for Orthologs for BMS1P1 Gene

Paralogs for BMS1P1 Gene

No data available for Paralogs for BMS1P1 Gene

Variants for BMS1P1 Gene

Sequence variations from dbSNP and Humsavar for BMS1P1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1045719 -- 46,810,121(+) T/C non_coding_transcript_variant
rs1045720 -- 46,810,125(+) A/T non_coding_transcript_variant
rs111697927 -- 46,807,409(+) T/C intron_variant
rs112534966 -- 46,812,233(+) A/C downstream_transcript_variant
rs112756149 -- 46,792,674(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BMS1P1 Gene

Variant ID Type Subtype PubMed ID
dgv1120n54 CNV loss 21841781
dgv448n106 CNV deletion 24896259
dgv734n100 CNV gain 25217958
dgv737n100 CNV loss 25217958
dgv738n100 CNV loss 25217958
dgv739n100 CNV gain 25217958
dgv740n100 CNV gain+loss 25217958
dgv742n100 CNV loss 25217958
dgv743n100 CNV gain 25217958
esv2736152 CNV deletion 23290073
esv3578801 CNV loss 25503493
esv3584617 CNV loss 24956385
nsv1042820 CNV gain+loss 25217958
nsv1068692 CNV deletion 25765185
nsv1121807 CNV deletion 24896259
nsv1126251 CNV deletion 24896259
nsv1143634 CNV deletion 24896259
nsv1143636 CNV deletion 24896259
nsv550719 CNV loss 21841781
nsv550802 CNV loss 21841781
nsv821253 CNV deletion 20802225
nsv831850 CNV gain+loss 17160897
nsv947922 CNV duplication 23825009
nsv947960 CNV duplication 23825009
nsv951571 CNV deletion 24416366
nsv975690 CNV duplication 23825009
nsv975691 CNV duplication 23825009

Additional Variant Information for BMS1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMS1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BMS1P1 Gene

Disorders for BMS1P1 Gene

No disorders were found for BMS1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BMS1P1 Gene

Publications for BMS1P1 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms. (PMID: 11779832) Crosier M … Jackson MS (Genome research 2002) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3

Products for BMS1P1 Gene

Sources for BMS1P1 Gene

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