Aliases for BMP8B-AS1 Gene

Subcategory (RNA class) for BMP8B-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for BMP8B-AS1 Gene

  • BMP8B Antisense RNA 1 2 3 5
  • BMP8B-AS1 2 5
  • NONHSAG001128.2 91
  • HSALNG0002806 164
  • Lnc-PPIE-6 165

External Ids for BMP8B-AS1 Gene

Summaries for BMP8B-AS1 Gene

GeneCards Summary for BMP8B-AS1 Gene

BMP8B-AS1 (BMP8B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BMP8B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BMP8B-AS1 Gene

Genomics for BMP8B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BMP8B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J039780 Enhancer 0.3 Ensembl 600.7 -0.7 -668 0.2 SPI1 GLIS1 BMP8B-AS1 BMP8B OXCT2
GH01J039779 Enhancer 0.2 FANTOM5 600.7 -0.1 -75 0.2 BMP8B-AS1 TMCO2 OXCT2 PPIE HEYL BMP8B
GH01J039776 Enhancer 0.7 Ensembl 0.7 -3.8 -3768 2.8 TCF12 IKZF2 PKNOX1 DPF2 RELB RUNX3 GATAD2B CEBPB OSR2 ZBTB40 PPIE OXCT2 OXCT2P1 BMP8B BMP8B-AS1
GH01J039785 Enhancer 0.6 Ensembl 0.4 +5.8 5819 0.8 CREB1 ZIC2 DPF2 EGR1 ZFHX2 IKZF1 NR2F1 ZNF687 GLIS1 ZNF664 PPIE OXCT2 OXCT2P1 BMP8B BMP8B-AS1
GH01J039786 Enhancer 0.4 Ensembl 0.4 +6.6 6645 0.6 PRDM10 GLIS1 ZNF664 PPIE OXCT2 BMP8B BMP8B-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BMP8B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BMP8B-AS1 Gene

Genomic Locations for BMP8B-AS1 Gene
chr1:39,779,969-39,786,107
(GRCh38/hg38)
Size:
6,139 bases
Orientation:
Plus strand

Genomic View for BMP8B-AS1 Gene

Genes around BMP8B-AS1 on UCSC Golden Path with GeneCards custom track
BMP8B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
BMP8B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMP8B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMP8B-AS1 Gene

Proteins for BMP8B-AS1 Gene

Post-translational modifications for BMP8B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BMP8B-AS1 Gene

Domains & Families for BMP8B-AS1 Gene

Gene Families for BMP8B-AS1 Gene

genes like me logo Genes that share domains with BMP8B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BMP8B-AS1 Gene

Function for BMP8B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMP8B-AS1 Gene

Localization for BMP8B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BMP8B-AS1 Gene

Pathways & Interactions for BMP8B-AS1 Gene

PathCards logo

SuperPathways for BMP8B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BMP8B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BMP8B-AS1 Gene

Drugs & Compounds for BMP8B-AS1 Gene

No Compound Related Data Available

Transcripts for BMP8B-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BMP8B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000DB6D76_9606 lncRNA 1218 2

HGNC: 54364,

Ensembl: ENST00000648746 (view in UCSC) ,

URS00008BA0C8_9606 lncRNA 1379 3

LncBook: HSALNT0005360,

LNCipedia: lnc-PPIE-6:1,

NONCODE: NONHSAT002598.2,

URS00008B5441_9606 lncRNA 1211 3

LncBook: HSALNT0005361,

LNCipedia: lnc-PPIE-6:2,

NONCODE: NONHSAT002599.2,

URS00009AD329_9606 lncRNA 276 2

LncBook: HSALNT0005362,

NONCODE: NONHSAT148781.1,

BMP8B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for BMP8B-AS1 Gene

No ASD Table

Relevant External Links for BMP8B-AS1 Gene

GeneLoc Exon Structure for
BMP8B-AS1

No data available for mRNA/cDNA for BMP8B-AS1 Gene

Expression for BMP8B-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BMP8B-AS1 Gene

Orthologs for BMP8B-AS1 Gene

Evolution for BMP8B-AS1 Gene

ENSEMBL:
Gene Tree for BMP8B-AS1 (if available)
TreeFam:
Gene Tree for BMP8B-AS1 (if available)

No data available for Orthologs for BMP8B-AS1 Gene

Paralogs for BMP8B-AS1 Gene

No data available for Paralogs for BMP8B-AS1 Gene

Variants for BMP8B-AS1 Gene

Additional dbSNP identifiers (rs#s) for BMP8B-AS1 Gene

Additional Variant Information for BMP8B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMP8B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BMP8B-AS1 Gene

Disorders for BMP8B-AS1 Gene

No disorders were found for BMP8B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for BMP8B-AS1 Gene

Publications for BMP8B-AS1 Gene

No publications were found for BMP8B-AS1 Gene.

No data available for Mastermind for BMP8B-AS1 Gene

Products for BMP8B-AS1 Gene

Sources for BMP8B-AS1 Gene