Aliases for BMF-AS1 Gene

Data sources for BMF-AS1 Gene:

RNA type for BMF-AS1 Gene

lncRNA

Aliases for BMF-AS1 Gene

External Ids for BMF-AS1 Gene

Summaries for BMF-AS1 Gene

GeneCards Summary for BMF-AS1 Gene

BMF-AS1 (BMF Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BMF-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BMF-AS1 Gene

Genomics for BMF-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BMF-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J040087 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 250.7 -0.2 -213 3.4 SSRP1 CEBPA ATF3 ZIC2 YY1 MXD4 CEBPB HOMEZ SIN3A KMT2B BMF-AS1 piR-54168 SRP14-AS1 BMF SRP14 BUB1B EIF2AK4 PAK6 PAK6-AS1 LOC105370787
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BMF-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BMF-AS1 Gene

Latest Assembly
chr15:40,088,736-40,089,386
(GRCh38/hg38)
Size:
651 bases
Orientation:
Plus strand

Previous Assembly
chr15:40,381,033-40,381,587
(GRCh37/hg19 by Ensembl)
Size:
555 bases
Orientation:
Plus strand

Genomic View for BMF-AS1 Gene

Genes around BMF-AS1 on UCSC Golden Path with GeneCards custom track
BMF-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
BMF-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMF-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for BMF-AS1 Gene

Proteins for BMF-AS1 Gene

Post-translational modifications for BMF-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BMF-AS1 Gene

Domains & Families for BMF-AS1 Gene

Gene Families for BMF-AS1 Gene

genes like me logo Genes that share domains with BMF-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BMF-AS1 Gene

Function for BMF-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMF-AS1 Gene

Localization for BMF-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BMF-AS1 Gene

Pathways & Interactions for BMF-AS1 Gene

PathCards logo

SuperPathways for BMF-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BMF-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BMF-AS1 Gene

Drugs & Compounds for BMF-AS1 Gene

No Compound Related Data Available

Transcripts for BMF-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BMF-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000043DFC5_9606 lncRNA 463 3

Ensembl: ENST00000559022 (view in UCSC) ,

LNCipedia: BMF-AS1:3,

NONCODE: NONHSAT041809.2,

URS0001BE6786_9606 lncRNA 557 1

LncBook: HSALNT0218955,

BMF-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for BMF-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for BMF-AS1 Gene

No ASD Table

Relevant External Links for BMF-AS1 Gene

GeneLoc Exon Structure for
BMF-AS1

Expression for BMF-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BMF-AS1 Gene

Orthologs for BMF-AS1 Gene

Evolution for BMF-AS1 Gene

ENSEMBL:
Gene Tree for BMF-AS1 (if available)
TreeFam:
Gene Tree for BMF-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for BMF-AS1

No data available for Orthologs for BMF-AS1 Gene

Paralogs for BMF-AS1 Gene

No data available for Paralogs for BMF-AS1 Gene

Variants for BMF-AS1 Gene

Additional Variant Information for BMF-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMF-AS1
Leiden Open Variation Database (LOVD)
BMF-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BMF-AS1 Gene

Disorders for BMF-AS1 Gene

No disorders were found for BMF-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for BMF-AS1 Gene

Publications for BMF-AS1 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

No data available for Mastermind for BMF-AS1 Gene

Products for BMF-AS1 Gene

Sources for BMF-AS1 Gene