Aliases for BLACAT1 Gene

Subcategory (RNA class) for BLACAT1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for BLACAT1 Gene

  • Bladder Cancer Associated Transcript 1 2 3 5
  • Long Intergenic Noncoding RNA Up-Regulated In Bladder Cancer 2 3
  • Bladder Cancer Associated Transcript 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 912 2 3
  • BLACAT1 2 170
  • Bladder Cancer-Associated Transcript 1 13
  • Onco-LncRNA-30 3
  • HSALNG0009941 169
  • NONHSAG004054 94
  • LINC00912 3
  • Linc-UBC1 3

External Ids for BLACAT1 Gene

Previous GeneCards Identifiers for BLACAT1 Gene

  • GC01U903707

Summaries for BLACAT1 Gene

GeneCards Summary for BLACAT1 Gene

BLACAT1 (Bladder Cancer Associated Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with BLACAT1 include Bladder Cancer and Lung Cancer Susceptibility 3.

Additional gene information for BLACAT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BLACAT1 Gene

Genomics for BLACAT1 Gene

GeneHancer (GH) Regulatory Elements for BLACAT1 Gene

Promoters and enhancers for BLACAT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J205454 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 750.6 +0.9 864 3.3 GLIS2 ZBTB8A ZNF740 ZSCAN4 POLR2A SP2 ZFX USF1 TEAD1 ZFHX2 BLACAT1 LEMD1 LEMD1-DT
GH01J205444 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +8.7 8706 8.5 RBPJ SMARCE1 POLR2A NR2F6 POU5F1 NFIB ZNF652 SP1 ZKSCAN8 ZNF148 MIR135B NFASC NUCKS1 DSTYK BLACAT1 LEMD1 LOC105371698
GH01J205440 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +15.3 15341 3.4 L3MBTL2 ZNF652 ELF3 ZFX ZNF687 PRDM1 SP5 IKZF1 ZIC2 PRDM10 DSTYK TMCC2 MIR135B LEMD1 BLACAT1 LOC105371698
GH01J205430 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 0.3 +26.4 26423 0.8 CTCF SMARCE1 CC2D1A L3MBTL2 RAD21 TEAD4 ZNF148 GTF2F1 SMARCA4 MTA1 MDM4 LEMD1 LEMD1-DT CDK18 LEMD1-AS1 KLHDC8A MFSD4A ELK4 MIR135B BLACAT1
GH01J205473 Enhancer 0.6 FANTOM5 Ensembl 0.4 -16.2 -16210 1 ETV6 PRDM1 ZBTB48 ZNF366 TRK-TTT8-1 TMEM81 PM20D1 CNTN2 BLACAT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BLACAT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BLACAT1 Gene

Genomic Locations for BLACAT1 Gene
chr1:205,381,378-205,457,091
(GRCh38/hg38)
Size:
75,714 bases
Orientation:
Minus strand

Genomic View for BLACAT1 Gene

Genes around BLACAT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BLACAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BLACAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BLACAT1 Gene

Proteins for BLACAT1 Gene

  • Protein details for BLACAT1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A494BZU2-A0A494BZU2_HUMAN
    Recommended name:
    Bladder cancer-associated transcript 1
    Protein Accession:
    A0A494BZU2

    Protein attributes for BLACAT1 Gene

    Size:
    33 amino acids
    Molecular mass:
    3946 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BLACAT1 Gene

Post-translational modifications for BLACAT1 Gene

No Post-translational modifications

Other Protein References for BLACAT1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for BLACAT1 Gene

Domains & Families for BLACAT1 Gene

Gene Families for BLACAT1 Gene

Protein Domains for BLACAT1 Gene

ProtoNet:
genes like me logo Genes that share domains with BLACAT1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BLACAT1 Gene

Function for BLACAT1 Gene

Phenotypes From GWAS Catalog for BLACAT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BLACAT1 Gene

Localization for BLACAT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BLACAT1 Gene

Pathways & Interactions for BLACAT1 Gene

PathCards logo

SuperPathways for BLACAT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BLACAT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BLACAT1 Gene

Drugs & Compounds for BLACAT1 Gene

No Compound Related Data Available

Transcripts for BLACAT1 Gene

mRNA/cDNA for BLACAT1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNACentral transcripts :
(7) LNCipedia transcripts :
(4) LncBook transcripts :
(4) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for BLACAT1 Gene

No ASD Table

Relevant External Links for BLACAT1 Gene

GeneLoc Exon Structure for
BLACAT1
ECgene alternative splicing isoforms for
BLACAT1

Expression for BLACAT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of BLACAT1 Gene:

BLACAT1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BLACAT1 Gene

Orthologs for BLACAT1 Gene

Evolution for BLACAT1 Gene

ENSEMBL:
Gene Tree for BLACAT1 (if available)
TreeFam:
Gene Tree for BLACAT1 (if available)

No data available for Orthologs for BLACAT1 Gene

Paralogs for BLACAT1 Gene

No data available for Paralogs for BLACAT1 Gene

Variants for BLACAT1 Gene

Sequence variations from dbSNP and Humsavar for BLACAT1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000000971 -- 205,444,187(-) C/A intron_variant
rs1000095534 -- 205,444,426(-) G/C/T intron_variant
rs1000105702 -- 205,444,381(-) A/C intron_variant
rs1000171642 -- 205,442,889(-) T/C intron_variant
rs1000371276 -- 205,449,244(-) AAAA/AAA intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BLACAT1 Gene

Variant ID Type Subtype PubMed ID
nsv1014629 CNV gain 25217958
nsv1068038 CNV deletion 25765185
nsv832381 CNV gain 17160897
nsv952642 CNV deletion 24416366
nsv952643 CNV deletion 24416366

Additional Variant Information for BLACAT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BLACAT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BLACAT1 Gene

Disorders for BLACAT1 Gene

MalaCards: The human disease database

(6) MalaCards diseases for BLACAT1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
bladder cancer
  • bladder cancer, somatic
lung cancer susceptibility 3
  • lncr3
cervical cancer
  • cervical cancer, somatic
lung cancer
  • adenocarcinoma of lung
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for BLACAT1

genes like me logo Genes that share disorders with BLACAT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BLACAT1 Gene

Publications for BLACAT1 Gene

  1. linc-UBC1 physically associates with polycomb repressive complex 2 (PRC2) and acts as a negative prognostic factor for lymph node metastasis and survival in bladder cancer. (PMID: 23688781) He W … Lin T (Biochimica et biophysica acta 2013) 2 3 56
  2. LncRNA BLACAT1 is involved in chemoresistance of non‑small cell lung cancer cells by regulating autophagy. (PMID: 30387831) Huang FX … Miao LJ (International journal of oncology 2019) 3 56
  3. LncRNA BLACAT1 accelerates the proliferation and migration of osteosarcoma cells through regulating STAT3. (PMID: 30665678) Dong Z … Wang Y (Pathology, research and practice 2019) 3 56
  4. Long noncoding RNA linc-UBC1 promotes tumor invasion and metastasis by regulating EZH2 and repressing E-cadherin in esophageal squamous cell carcinoma. (PMID: 29552776) Niu G … Cao G (Journal of B.U.ON. : official journal of the Balkan Union of Oncology 2018) 3 56
  5. Long noncoding RNA BLACAT1 modulates ABCB1 to promote oxaliplatin resistance of gastric cancer via sponging miR-361. (PMID: 29710482) Wu X … Dong X (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2018) 3 56

Products for BLACAT1 Gene

Sources for BLACAT1 Gene