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Aliases for BISPR Gene

Subcategory (RNA class) for BISPR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BISPR Gene

  • BST2 Interferon Stimulated Positive Regulator (Non-Protein Coding) 2 3 5
  • BST2 IFN-Stimulated Positive Regulator 3
  • CTD-2521M24.9 3
  • LncBST2 3

External Ids for BISPR Gene

Previous GeneCards Identifiers for BISPR Gene

  • GC19P017551
  • GC19P017705
  • GC19P017730
  • GC19P018350
  • GC19P018733
  • GC19P019045
  • GC19P019362

Summaries for BISPR Gene

GeneCards Summary for BISPR Gene

BISPR (BST2 Interferon Stimulated Positive Regulator (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BISPR Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BISPR Gene

Genomics for BISPR Gene

GeneHancer (GH) Regulatory Elements for BISPR Gene

Promoters and enhancers for BISPR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I017403 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 566.6 -0.1 -119 5 HDGF PKNOX1 SMAD1 ARNT ARID4B DMAP1 IRF4 YY1 SLC30A9 POLR2B MVB12A BISPR BST2 ENSG00000267904 ENSG00000268087 CHERP C19orf44 ENSG00000269578 ENSG00000268743 SMIM7
GH19I017418 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 13.3 +14.2 14221 2.3 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 MVB12A ENSG00000269053 HMGB3P29 BISPR CHERP LOC100507551 ENSG00000269481
GH19I017424 Enhancer 1.1 Ensembl ENCODE 16.8 +19.4 19361 0.8 PKNOX1 ATF1 ARNT SIN3A GLI4 ZNF2 GLIS2 ARID2 ZNF143 ATF7 BISPR ENSG00000269481 MVB12A TMEM221
GH19I017394 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.1 -10.5 -10499 1.1 HDGF PKNOX1 ARNT SIN3A YBX1 ZNF2 POLR2B ZNF213 E2F8 ZNF143 LOC105372343 CCDC194 BISPR BST2 GC19P020268
GH19I017377 Promoter/Enhancer 1.4 EPDnew Ensembl dbSUPER 10 -28.4 -28385 0.6 TEAD4 TAL1 TCF12 NCOR1 EGR1 VEZF1 CBFA2T2 SMARCE1 BHLHE40 CBFA2T3 PLVAP BISPR GC19P020268
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BISPR on UCSC Golden Path with GeneCards custom track

Genomic Locations for BISPR Gene

Genomic Locations for BISPR Gene
chr19:17,405,686-17,418,904
(GRCh38/hg38)
Size:
13,219 bases
Orientation:
Plus strand
chr19:16,148,246-16,148,278
(GRCh37/hg19)

Genomic View for BISPR Gene

Genes around BISPR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BISPR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BISPR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BISPR Gene

Proteins for BISPR Gene

Post-translational modifications for BISPR Gene

No Post-translational modifications

No data available for DME Specific Peptides for BISPR Gene

Domains & Families for BISPR Gene

Gene Families for BISPR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BISPR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BISPR Gene

Function for BISPR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BISPR Gene

Localization for BISPR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BISPR Gene

Pathways & Interactions for BISPR Gene

SuperPathways for BISPR Gene

No Data Available

Interacting Proteins for BISPR Gene

Gene Ontology (GO) - Biological Process for BISPR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BISPR Gene

Drugs & Compounds for BISPR Gene

No Compound Related Data Available

Transcripts for BISPR Gene

mRNA/cDNA for BISPR Gene

(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BISPR Gene

No ASD Table

Relevant External Links for BISPR Gene

GeneLoc Exon Structure for
BISPR
ECgene alternative splicing isoforms for
BISPR

Expression for BISPR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BISPR Gene

NURSA nuclear receptor signaling pathways regulating expression of BISPR Gene:

BISPR
genes like me logo Genes that share expression patterns with BISPR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BISPR Gene

Orthologs for BISPR Gene

Evolution for BISPR Gene

ENSEMBL:
Gene Tree for BISPR (if available)
TreeFam:
Gene Tree for BISPR (if available)

No data available for Orthologs for BISPR Gene

Paralogs for BISPR Gene

No data available for Paralogs for BISPR Gene

Variants for BISPR Gene

Sequence variations from dbSNP and Humsavar for BISPR Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000157410 -- 17,408,539(+) G/A/T intron_variant
rs1000906895 -- 17,406,000(+) C/T intron_variant
rs1000937391 -- 17,406,221(+) C/T non_coding_transcript_variant
rs1001013922 -- 17,412,837(+) C/T intron_variant
rs1001471429 -- 17,412,110(+) A/C intron_variant

Additional Variant Information for BISPR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BISPR

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BISPR Gene

Disorders for BISPR Gene

Additional Disease Information for BISPR

No disorders were found for BISPR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BISPR Gene

Publications for BISPR Gene

  1. Long Non-Coding RNA BST2/BISPR is Induced by IFN and Regulates the Expression of the Antiviral Factor Tetherin. (PMID: 25620967) Barriocanal M … Fortes P (Frontiers in immunology 2014) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for BISPR Gene

Sources for BISPR Gene

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