Aliases for BIN3-IT1 Gene

Subcategory (RNA class) for BIN3-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for BIN3-IT1 Gene

  • BIN3 Intronic Transcript 1 2 3
  • BIN3 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • BIN3-IT1 2 165
  • NONHSAG049733.2 91
  • HSALNG0141598 164
  • FLJ14107 2

External Ids for BIN3-IT1 Gene

Previous GeneCards Identifiers for BIN3-IT1 Gene

  • GC08M022498

Summaries for BIN3-IT1 Gene

GeneCards Summary for BIN3-IT1 Gene

BIN3-IT1 (BIN3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BIN3-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BIN3-IT1 Gene

Genomics for BIN3-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BIN3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J022638 Enhancer 0.9 ENCODE dbSUPER 600.7 +0.0 42 6.9 CTCF RFX1 IKZF1 PRDM1 PHF21A DPF2 HDAC1 SOX6 CEBPA NONO BIN3-IT1 C8orf58 ENSG00000253200 CCAR2 BIN3 ENSG00000248235 PDLIM2 LOC101929237 RHOBTB2 RF00017-6881
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BIN3-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BIN3-IT1 Gene

Genomic Locations for BIN3-IT1 Gene
chr8:22,640,370-22,642,209
(GRCh38/hg38)
Size:
1,840 bases
Orientation:
Minus strand
chr8:22,497,884-22,499,722
(GRCh37/hg19)
Size:
1,839 bases
Orientation:
Minus strand

Genomic View for BIN3-IT1 Gene

Genes around BIN3-IT1 on UCSC Golden Path with GeneCards custom track
BIN3-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
BIN3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BIN3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BIN3-IT1 Gene

Proteins for BIN3-IT1 Gene

Post-translational modifications for BIN3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BIN3-IT1 Gene

Domains & Families for BIN3-IT1 Gene

Gene Families for BIN3-IT1 Gene

Suggested Antigen Peptide Sequences for BIN3-IT1 Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ14107 fis, clone MAMMA1001252 (Q9H7X8_HUMAN)
genes like me logo Genes that share domains with BIN3-IT1: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BIN3-IT1 Gene

Function for BIN3-IT1 Gene

Phenotypes From GWAS Catalog for BIN3-IT1 Gene

Phenotypes for BIN3-IT1 Gene

GenomeRNAi human phenotypes for BIN3-IT1:
genes like me logo Genes that share phenotypes with BIN3-IT1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BIN3-IT1 Gene

Localization for BIN3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BIN3-IT1 Gene

Pathways & Interactions for BIN3-IT1 Gene

PathCards logo

SuperPathways for BIN3-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BIN3-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BIN3-IT1 Gene

Drugs & Compounds for BIN3-IT1 Gene

No Compound Related Data Available

Transcripts for BIN3-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BIN3-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E0E5_9606 lncRNA 1839 4

HGNC: 25868,

RefSeq: NR_027715,

LNCipedia: BIN3-IT1:3,

NONCODE: NONHSAT125501.2,

URS0000EBF840_9606 lncRNA 1840 1

LncBook: HSALNT0289487,

BIN3-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for BIN3-IT1 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for BIN3-IT1 Gene

No ASD Table

Relevant External Links for BIN3-IT1 Gene

GeneLoc Exon Structure for
BIN3-IT1

Expression for BIN3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BIN3-IT1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BIN3-IT1

genes like me logo Genes that share expression patterns with BIN3-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BIN3-IT1 Gene

Orthologs for BIN3-IT1 Gene

No data available for Orthologs and Evolution for BIN3-IT1 Gene

Paralogs for BIN3-IT1 Gene

No data available for Paralogs for BIN3-IT1 Gene

Variants for BIN3-IT1 Gene

Additional dbSNP identifiers (rs#s) for BIN3-IT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for BIN3-IT1 Gene

Variant ID Type Subtype PubMed ID
esv2759604 CNV loss 17122850
esv3572633 CNV loss 25503493

Additional Variant Information for BIN3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BIN3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for BIN3-IT1 Gene

Disorders for BIN3-IT1 Gene

Additional Disease Information for BIN3-IT1

No disorders were found for BIN3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BIN3-IT1 Gene

Publications for BIN3-IT1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for BIN3-IT1 Gene

Sources for BIN3-IT1 Gene