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Aliases for BIN3-IT1 Gene

Subcategory (RNA class) for BIN3-IT1 Gene


Quality Score for this RNA gene is


Aliases for BIN3-IT1 Gene

  • BIN3 Intronic Transcript 1 2 3
  • BIN3 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for BIN3-IT1 Gene

ORGUL Members for BIN3-IT1 Gene

Previous GeneCards Identifiers for BIN3-IT1 Gene

  • GC08M022498

Summaries for BIN3-IT1 Gene

GeneCards Summary for BIN3-IT1 Gene

BIN3-IT1 (BIN3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BIN3-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BIN3-IT1 Gene

Genomics for BIN3-IT1 Gene

GeneHancer (GH) Regulatory Elements for BIN3-IT1 Gene

Promoters and enhancers for BIN3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J022638 Enhancer 1.2 Ensembl ENCODE dbSUPER 650.7 +0.0 42 6.9 HDAC1 ATF1 ZNF121 TCF12 GATA2 PHF21A ZNF592 NR2F2 PCBP2 SMARCA4 BIN3-IT1 C8orf58 BIN3 ENSG00000253200 CCAR2 ENSG00000248235 PDLIM2 LOC101929237 RHOBTB2 GC08P022638
GH08J022645 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.7 -4.2 -4220 1.2 SP7 ENSG00000253200 CCAR2 BIN3 C8orf58 ENSG00000248235 PDLIM2 LOC101929237 BIN3-IT1 GC08P022638 PIR54442
GH08J022656 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -16.8 -16792 4.1 HDAC1 HDGF FOXA2 TCF12 GATA2 EGR1 RCOR1 FOS EGR2 ZNF263 PIR54442 ENSG00000253200 FAM160B2 CCAR2 C8orf58 ENTPD4 ENSG00000245025 LOC105369180 BIN3 BIN3-IT1
GH08J022650 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -9.3 -9306 2.9 MEIS2 ZNF10 KLF17 CBFA2T3 ZEB2 JUND ZNF184 CBFA2T2 KDM1A ZNF600 ENSG00000253200 CCAR2 LOC101929237 ENSG00000248235 PDLIM2 C8orf58 BIN3-IT1 PIR54442 GC08P022638 BIN3
GH08J022648 Enhancer 0.6 dbSUPER 0.4 -6.6 -6570 1.3 FOXA2 FOXA3 ZNF10 FOXK2 HNF4A ZNF600 PRDM1 MAFK ZBTB17 C8orf58 BIN3 ENSG00000253200 CCAR2 ENSG00000248235 PDLIM2 LOC101929237 BIN3-IT1 GC08P022638 PIR54442
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BIN3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BIN3-IT1 Gene

Genomic Locations for BIN3-IT1 Gene
1,839 bases
Minus strand

Genomic View for BIN3-IT1 Gene

Genes around BIN3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BIN3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BIN3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BIN3-IT1 Gene

Function for BIN3-IT1 Gene

Phenotypes From GWAS Catalog for BIN3-IT1 Gene

Phenotypes for BIN3-IT1 Gene

genes like me logo Genes that share phenotypes with BIN3-IT1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BIN3-IT1 Gene

Localization for BIN3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BIN3-IT1 Gene

Pathways & Interactions for BIN3-IT1 Gene

SuperPathways for BIN3-IT1 Gene

No Data Available

Interacting Proteins for BIN3-IT1 Gene

Gene Ontology (GO) - Biological Process for BIN3-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for BIN3-IT1 Gene

Drugs & Compounds for BIN3-IT1 Gene

No Compound Related Data Available

Transcripts for BIN3-IT1 Gene

mRNA/cDNA for BIN3-IT1 Gene

(10) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for BIN3-IT1 Gene

No ASD Table

Relevant External Links for BIN3-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for BIN3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BIN3-IT1 Gene

genes like me logo Genes that share expression patterns with BIN3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BIN3-IT1 Gene

Orthologs for BIN3-IT1 Gene

No data available for Orthologs and Evolution for BIN3-IT1 Gene

Paralogs for BIN3-IT1 Gene

No data available for Paralogs for BIN3-IT1 Gene

Variants for BIN3-IT1 Gene

Sequence variations from dbSNP and Humsavar for BIN3-IT1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000581370 -- 22,641,566(-) C/T non_coding_transcript_variant
rs1001839117 -- 22,642,423(-) G/C upstream_transcript_variant
rs1002808045 -- 22,643,267(-) C/T upstream_transcript_variant
rs1002842209 -- 22,643,480(-) A/G upstream_transcript_variant
rs1005057687 -- 22,643,426(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for BIN3-IT1 Gene

Variant ID Type Subtype PubMed ID
esv2759604 CNV loss 17122850
esv3572633 CNV loss 25503493

Additional Variant Information for BIN3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BIN3-IT1 Gene

Disorders for BIN3-IT1 Gene

Additional Disease Information for BIN3-IT1

No disorders were found for BIN3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BIN3-IT1 Gene

Publications for BIN3-IT1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for BIN3-IT1 Gene

Sources for BIN3-IT1 Gene

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