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Aliases for BICRA-AS1 Gene

Subcategory (RNA class) for BICRA-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for BICRA-AS1 Gene

  • BICRA Antisense RNA 1 2 3 5
  • GLTSCR1 Antisense RNA 1 2 3
  • GLTSCR1-AS1 3

External Ids for BICRA-AS1 Gene

Previous HGNC Symbols for BICRA-AS1 Gene

  • GLTSCR1-AS1

Summaries for BICRA-AS1 Gene

GeneCards Summary for BICRA-AS1 Gene

BICRA-AS1 (BICRA Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BICRA-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BICRA-AS1 Gene

Genomics for BICRA-AS1 Gene

GeneHancer (GH) Regulatory Elements for BICRA-AS1 Gene

Promoters and enhancers for BICRA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J047626 Enhancer 0.6 Ensembl dbSUPER 600.7 +0.5 494 1 ZBTB17 ZNF362 BICRA-AS1 ENSG00000268746 BICRA ENSG00000277383
GH19J047607 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 +15.6 15626 7.5 SP1 ZFX ZNF148 NKRF MLLT1 POLR2A GTF2F1 FOS ZBTB7A YY1 SELENOW ZNF541 ZC3H4 MEIS3 CCDC9 LIG1 KPTN BICRA ENSG00000277383 ENSG00000268746
GH19J047623 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 +2.3 2288 1.8 ZNF384 SP7 SP5 PRDM1 ZNF644 EGR1 RXRA ZNF600 PRDM10 ZIC2 BICRA-AS1 ENSG00000268746 BICRA ENSG00000277383
GH19J047633 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -7.6 -7562 1.7 ZNF384 SP1 PRDM1 FOSL2 PRDM10 ZNF561 ZBTB44 JUND ZBTB17 ZNF707 CYTH2 BICRA ZC3H4 STRN4 LIG1 NOP53-AS1 BICRA-AS1 ENSG00000268746 ENSG00000278999
GH19J047657 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.3 -36.9 -36868 10.6 ELF3 MLLT1 ZNF121 RERE NCOA3 BACH1 MAFK TRIM24 SP1 SP5 ENSG00000278999 BICRA NOP53 ZC3H4 CCDC9 ZNF541 SNORD23 SULT2A1 GRWD1 BICRA-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BICRA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BICRA-AS1 Gene

Genomic Locations for BICRA-AS1 Gene
chr19:47,615,699-47,626,395
(GRCh38/hg38)
Size:
10,697 bases
Orientation:
Minus strand
chr19:48,118,956-48,129,652
(GRCh37/hg19)
Size:
10,697 bases
Orientation:
Minus strand

Genomic View for BICRA-AS1 Gene

Genes around BICRA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BICRA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BICRA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for BICRA-AS1 Gene

Proteins for BICRA-AS1 Gene

Post-translational modifications for BICRA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BICRA-AS1 Gene

Domains & Families for BICRA-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BICRA-AS1 Gene

Function for BICRA-AS1 Gene

Phenotypes From GWAS Catalog for BICRA-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BICRA-AS1 Gene

Localization for BICRA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BICRA-AS1 Gene

Pathways & Interactions for BICRA-AS1 Gene

PathCards logo

SuperPathways for BICRA-AS1 Gene

No Data Available

Interacting Proteins for BICRA-AS1 Gene

Gene Ontology (GO) - Biological Process for BICRA-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BICRA-AS1 Gene

Drugs & Compounds for BICRA-AS1 Gene

No Compound Related Data Available

Transcripts for BICRA-AS1 Gene

mRNA/cDNA for BICRA-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for BICRA-AS1 Gene

No ASD Table

Relevant External Links for BICRA-AS1 Gene

GeneLoc Exon Structure for
BICRA-AS1
ECgene alternative splicing isoforms for
BICRA-AS1

Expression for BICRA-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BICRA-AS1 Gene

Orthologs for BICRA-AS1 Gene

Evolution for BICRA-AS1 Gene

ENSEMBL:
Gene Tree for BICRA-AS1 (if available)
TreeFam:
Gene Tree for BICRA-AS1 (if available)

No data available for Orthologs for BICRA-AS1 Gene

Paralogs for BICRA-AS1 Gene

No data available for Paralogs for BICRA-AS1 Gene

Variants for BICRA-AS1 Gene

Additional Variant Information for BICRA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BICRA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BICRA-AS1 Gene

Disorders for BICRA-AS1 Gene

No disorders were found for BICRA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for BICRA-AS1 Gene

Publications for BICRA-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for BICRA-AS1 Gene

Products for BICRA-AS1 Gene

Sources for BICRA-AS1 Gene

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