Aliases for BICRA-AS1 Gene

Subcategory (RNA class) for BICRA-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for BICRA-AS1 Gene

  • BICRA Antisense RNA 1 2 3 5
  • BICRA-AS1 2 5 165
  • GLTSCR1 Antisense RNA 1 2 3
  • NONHSAG026130.2 91
  • GLTSCR1-AS1 3

External Ids for BICRA-AS1 Gene

Previous HGNC Symbols for BICRA-AS1 Gene

  • GLTSCR1-AS1

Summaries for BICRA-AS1 Gene

GeneCards Summary for BICRA-AS1 Gene

BICRA-AS1 (BICRA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BICRA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BICRA-AS1 Gene

Genomics for BICRA-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BICRA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J047626 Enhancer 0.3 dbSUPER 600.7 +0.5 460 1.6 ZBTB17 ZNF362 BICRA-AS1 RF00017-3035 ENSG00000268746 BICRA EHD2
GH19J047623 Enhancer 0.9 ENCODE dbSUPER 0.7 +2.3 2288 1.8 PRDM10 PRDM1 ZIC2 PKNOX1 PBX2 ZNF600 ZBTB20 TCF7 EGR1 BCL11A RF00017-3035 BICRA-AS1 ENSG00000268746 ENSG00000277383 BICRA EHD2
GH19J047632 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -8.7 -8669 8.5 PRDM10 ZNF692 ZNF7 PRDM1 SP1 ZNF341 ZNF561 SCRT2 ZBTB44 ZNF140 ZC3H4 CYTH2 BICRA NOP53-AS1 GRWD1 STRN4 ENSG00000268093 LIG1 CCDC9 BICRA-AS1
GH19J047647 Enhancer 1.2 ENCODE dbSUPER 0.4 -22.2 -22205 2.8 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 TFE3 LEF1 IKZF1 RCOR2 TARDBP CA11 ZSWIM9 SELENOW ENSG00000278999 lnc-ZNF541-4 BICRA-AS1 ENSG00000268746 BICRA EHD2
GH19J047627 Enhancer 0.6 ENCODE dbSUPER 0.7 -2.1 -2055 1.1 ZNF524 ZNF664 ZNF121 RAD51 BICRA-AS1 ENSG00000268746 BICRA ENSG00000278999 lnc-ZNF541-4 EHD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BICRA-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BICRA-AS1 Gene

Genomic Locations for BICRA-AS1 Gene
chr19:47,615,699-47,626,395
(GRCh38/hg38)
Size:
10,697 bases
Orientation:
Minus strand
chr19:48,118,956-48,129,652
(GRCh37/hg19)
Size:
10,697 bases
Orientation:
Minus strand

Genomic View for BICRA-AS1 Gene

Genes around BICRA-AS1 on UCSC Golden Path with GeneCards custom track
BICRA-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
BICRA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BICRA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for BICRA-AS1 Gene

Proteins for BICRA-AS1 Gene

Post-translational modifications for BICRA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BICRA-AS1 Gene

Domains & Families for BICRA-AS1 Gene

Gene Families for BICRA-AS1 Gene

genes like me logo Genes that share domains with BICRA-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BICRA-AS1 Gene

Function for BICRA-AS1 Gene

Phenotypes From GWAS Catalog for BICRA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BICRA-AS1 Gene

Localization for BICRA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BICRA-AS1 Gene

Pathways & Interactions for BICRA-AS1 Gene

PathCards logo

SuperPathways for BICRA-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BICRA-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BICRA-AS1 Gene

Drugs & Compounds for BICRA-AS1 Gene

No Compound Related Data Available

Transcripts for BICRA-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BICRA-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000286F6A_9606 lncRNA 547 4

HGNC: 51588,

Ensembl: ENST00000598376 (view in UCSC) ,

LNCipedia: BICRA-AS1:3,

NONCODE: NONHSAT066981.2,

BICRA-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for BICRA-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for BICRA-AS1 Gene

No ASD Table

Relevant External Links for BICRA-AS1 Gene

GeneLoc Exon Structure for
BICRA-AS1

Expression for BICRA-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BICRA-AS1 Gene

Orthologs for BICRA-AS1 Gene

Evolution for BICRA-AS1 Gene

ENSEMBL:
Gene Tree for BICRA-AS1 (if available)
TreeFam:
Gene Tree for BICRA-AS1 (if available)

No data available for Orthologs for BICRA-AS1 Gene

Paralogs for BICRA-AS1 Gene

No data available for Paralogs for BICRA-AS1 Gene

Variants for BICRA-AS1 Gene

Additional Variant Information for BICRA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BICRA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BICRA-AS1 Gene

Disorders for BICRA-AS1 Gene

No disorders were found for BICRA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for BICRA-AS1 Gene

Publications for BICRA-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for BICRA-AS1 Gene

Products for BICRA-AS1 Gene

Sources for BICRA-AS1 Gene