Aliases for BHMG1 Gene

Aliases for BHMG1 Gene

  • Basic Helix-Loop-Helix And HMG-Box Containing 1 2 3 5
  • Basic Helix-Loop-Helix And HMG Box Domain-Containing Protein 1 3 4
  • Basic Helix-Loop-Helix And HMG Box Domain Containing 1 2 3
  • HMG Domain Containing 2 3
  • HMGDC 3

External Ids for BHMG1 Gene

Summaries for BHMG1 Gene

GeneCards Summary for BHMG1 Gene

BHMG1 (Basic Helix-Loop-Helix And HMG-Box Containing 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include chromatin binding and protein dimerization activity.

Additional gene information for BHMG1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BHMG1 Gene

Genomics for BHMG1 Gene

GeneHancer (GH) Regulatory Elements for BHMG1 Gene

Promoters and enhancers for BHMG1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J045720 Enhancer 0.9 ENCODE 500.7 -1.9 -1919 3.4 FOXK2 POLR2G NCOR1 POLR2A SKI TBX3 FOXA2 KLF9 WT1 ZBTB17 BHMG1 DMWD DMPK DM1-AS ENSG00000279407 lnc-SNRPD2-2 FBXO46
GH19J045725 Enhancer 0.2 Ensembl 500.7 +1.4 1409 0.2 BHMG1 FBXO46
GH19J045763 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.2 +44.8 44845 10.4 HNRNPK FOXK2 ZNF217 EP300 CTCF TCF12 SIN3A NRF1 POLR2G USF1 DM1-AS 5MWI_A-089 SIX5 CCDC61 CLASRP SYMPK FBXO46 ENSG00000268810 ENSG00000269148 ENSG00000267114
GH19J045690 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 11.1 -31.5 -31547 3.5 FOXK2 ZBTB40 ZNF217 CTCF TCF12 SIN3A NRF1 USF1 POLR2G SP1 QPCTL SNRPD2 MF281430-046 lnc-SNRPD2-1 ENSG00000267114 FBXO46 BHMG1 EML2 GPR4 OPA3
GH19J045774 Enhancer 0.7 ENCODE dbSUPER 11.2 +51.1 51066 0.2 GABPA CTCF MYC RAD21 YY1 ARID4B MAX ELF1 POLR2A TRIM22 FBXO46 BHMG1 FOXA3 SYMPK lnc-SIX5-1 lnc-SIX5-3 DMPK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BHMG1 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for BHMG1

Genomic Locations for BHMG1 Gene

Genomic Locations for BHMG1 Gene
chr19:45,723,892-45,764,539
(GRCh38/hg38)
Size:
40,648 bases
Orientation:
Plus strand
chr19:46,236,509-46,267,792
(GRCh37/hg19)
Size:
31,284 bases
Orientation:
Plus strand

Genomic View for BHMG1 Gene

Genes around BHMG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BHMG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BHMG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BHMG1 Gene

Proteins for BHMG1 Gene

  • Protein details for BHMG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    C9JSJ3-BHMG1_HUMAN
    Recommended name:
    Basic helix-loop-helix and HMG box domain-containing protein 1
    Protein Accession:
    C9JSJ3

    Protein attributes for BHMG1 Gene

    Size:
    638 amino acids
    Molecular mass:
    70198 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BHMG1 Gene

Post-translational modifications for BHMG1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for BHMG1 Gene

No data available for DME Specific Peptides for BHMG1 Gene

Domains & Families for BHMG1 Gene

Gene Families for BHMG1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for BHMG1 Gene

genes like me logo Genes that share domains with BHMG1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BHMG1 Gene

Function for BHMG1 Gene

Phenotypes From GWAS Catalog for BHMG1 Gene

Gene Ontology (GO) - Molecular Function for BHMG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046983 protein dimerization activity IEA --
genes like me logo Genes that share ontologies with BHMG1: view

Phenotypes for BHMG1 Gene

genes like me logo Genes that share phenotypes with BHMG1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BHMG1 Gene

Localization for BHMG1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BHMG1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BHMG1 gene
Compartment Confidence
nucleus 4
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for BHMG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with BHMG1: view

Pathways & Interactions for BHMG1 Gene

PathCards logo

SuperPathways for BHMG1 Gene

No Data Available

Interacting Proteins for BHMG1 Gene

;

Gene Ontology (GO) - Biological Process for BHMG1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BHMG1 Gene

Drugs & Compounds for BHMG1 Gene

No Compound Related Data Available

Transcripts for BHMG1 Gene

mRNA/cDNA for BHMG1 Gene

1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BHMG1 Gene

No ASD Table

Relevant External Links for BHMG1 Gene

GeneLoc Exon Structure for
BHMG1

Expression for BHMG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BHMG1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BHMG1

genes like me logo Genes that share expression patterns with BHMG1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BHMG1 Gene

Orthologs for BHMG1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for BHMG1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 31
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm4969 31
  • 46 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii si:ch211-191j22.7 31
  • 22 (a)
OneToOne
Species where no ortholog for BHMG1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BHMG1 Gene

ENSEMBL:
Gene Tree for BHMG1 (if available)
TreeFam:
Gene Tree for BHMG1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for BHMG1: view image

Paralogs for BHMG1 Gene

No data available for Paralogs for BHMG1 Gene

Variants for BHMG1 Gene

Additional dbSNP identifiers (rs#s) for BHMG1 Gene

Structural Variations from Database of Genomic Variants (DGV) for BHMG1 Gene

Variant ID Type Subtype PubMed ID
esv2663012 CNV deletion 23128226
esv987735 CNV deletion 20482838
nsv579870 CNV loss 21841781

Additional Variant Information for BHMG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BHMG1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for BHMG1 Gene

Disorders for BHMG1 Gene

Additional Disease Information for BHMG1

No disorders were found for BHMG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BHMG1 Gene

Publications for BHMG1 Gene

  1. Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes. (PMID: 23044541) Gascoigne DK … Mattick JS (Bioinformatics (Oxford, England) 2012) 2 3 54
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 4 54

Products for BHMG1 Gene

Sources for BHMG1 Gene