Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BHMG1 Gene

Aliases for BHMG1 Gene

  • Basic Helix-Loop-Helix And HMG-Box Containing 1 2 3 5
  • Basic Helix-Loop-Helix And HMG Box Domain Containing 1 2 3
  • HMG Domain Containing 2 3
  • Basic Helix-Loop-Helix And HMG Box Domain-Containing Protein 1 3
  • HMGDC 3

External Ids for BHMG1 Gene

Summaries for BHMG1 Gene

GeneCards Summary for BHMG1 Gene

BHMG1 (Basic Helix-Loop-Helix And HMG-Box Containing 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include chromatin binding and protein dimerization activity.

Additional gene information for BHMG1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BHMG1 Gene

Genomics for BHMG1 Gene

GeneHancer (GH) Regulatory Elements for BHMG1 Gene

Promoters and enhancers for BHMG1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J045720 Enhancer 1.1 Ensembl ENCODE 650.7 -1.9 -1919 3.4 FOXA2 ARID4B DMAP1 ETS1 YY1 GTF3C2 ZNF121 GLIS2 FOS RXRA BHMG1 FBXO46 DMWD CCDC61 ENSG00000269148 CLASRP DMPK DM1-AS ENSG00000279407
GH19J045763 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 21.2 +45.0 44950 10.2 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC DM1-AS SIX5 CCDC61 SYMPK ENSG00000268810 CLASRP ENSG00000267114 FBXO46 ENSG00000269148 BHMG1
GH19J045401 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10 -319.3 -319320 6.2 CLOCK FEZF1 YY1 ZNF213 E2F8 ZNF143 SP3 MEF2D GLIS1 RCOR2 CD3EAP PPP1R13L CCDC61 ZNF180 CLASRP FBXO46 ENSG00000269148 ENSG00000268810 SYMPK IRF2BP1
GH19J045861 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.1 +140.7 140697 5.7 MLX FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC SYMPK FOXA3 ENSG00000268810 CCDC61 CLASRP DMWD FBXO46 ENSG00000267114 QPCTL ENSG00000269148
GH19J045690 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.1 -31.4 -31420 3.2 HDGF FOXA2 PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B QPCTL SNRPD2 CCDC61 ENSG00000268810 FBXO46 SYMPK ENSG00000269148 CLASRP ENSG00000267114 IRF2BP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BHMG1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BHMG1 Gene

Genomic Locations for BHMG1 Gene
chr19:45,723,892-45,764,539
(GRCh38/hg38)
Size:
40,648 bases
Orientation:
Plus strand
chr19:46,236,509-46,267,792
(GRCh37/hg19)

Genomic View for BHMG1 Gene

Genes around BHMG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BHMG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BHMG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BHMG1 Gene

Proteins for BHMG1 Gene

  • Protein details for BHMG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    C9JSJ3-BHMG1_HUMAN
    Recommended name:
    Basic helix-loop-helix and HMG box domain-containing protein 1
    Protein Accession:
    C9JSJ3

    Protein attributes for BHMG1 Gene

    Size:
    638 amino acids
    Molecular mass:
    70198 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BHMG1 Gene

Post-translational modifications for BHMG1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for BHMG1 Gene

No data available for DME Specific Peptides for BHMG1 Gene

Domains & Families for BHMG1 Gene

Gene Families for BHMG1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for BHMG1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BHMG1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BHMG1 Gene

Function for BHMG1 Gene

Phenotypes From GWAS Catalog for BHMG1 Gene

Gene Ontology (GO) - Molecular Function for BHMG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003682 chromatin binding IBA --
GO:0046983 protein dimerization activity IEA --
genes like me logo Genes that share ontologies with BHMG1: view

Phenotypes for BHMG1 Gene

genes like me logo Genes that share phenotypes with BHMG1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BHMG1 Gene

Localization for BHMG1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BHMG1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BHMG1 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for BHMG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with BHMG1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for BHMG1 Gene

Pathways & Interactions for BHMG1 Gene

SuperPathways for BHMG1 Gene

No Data Available

Interacting Proteins for BHMG1 Gene

Gene Ontology (GO) - Biological Process for BHMG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006338 chromatin remodeling IBA --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with BHMG1: view

No data available for Pathways by source and SIGNOR curated interactions for BHMG1 Gene

Drugs & Compounds for BHMG1 Gene

No Compound Related Data Available

Transcripts for BHMG1 Gene

mRNA/cDNA for BHMG1 Gene

(5) Selected AceView cDNA sequences:
(4) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BHMG1 Gene

No ASD Table

Relevant External Links for BHMG1 Gene

GeneLoc Exon Structure for
BHMG1
ECgene alternative splicing isoforms for
BHMG1

Expression for BHMG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BHMG1 Gene

NURSA nuclear receptor signaling pathways regulating expression of BHMG1 Gene:

BHMG1
genes like me logo Genes that share expression patterns with BHMG1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BHMG1 Gene

Orthologs for BHMG1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for BHMG1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 34
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm4969 34
  • 46 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii si:ch211-191j22.7 34
  • 22 (a)
OneToOne
Species where no ortholog for BHMG1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BHMG1 Gene

ENSEMBL:
Gene Tree for BHMG1 (if available)
TreeFam:
Gene Tree for BHMG1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for BHMG1: view image

Paralogs for BHMG1 Gene

No data available for Paralogs for BHMG1 Gene

Variants for BHMG1 Gene

Sequence variations from dbSNP and Humsavar for BHMG1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000000521 -- 45,731,355(+) CACCCAGGC/C upstream_transcript_variant
rs1000172350 -- 45,757,593(+) T/A intron_variant
rs1000267109 -- 45,756,171(+) C/T intron_variant
rs1000324526 -- 45,744,195(+) T/C intron_variant
rs1000328690 -- 45,737,524(+) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for BHMG1 Gene

Variant ID Type Subtype PubMed ID
esv2663012 CNV deletion 23128226
esv987735 CNV deletion 20482838
nsv579870 CNV loss 21841781

Additional Variant Information for BHMG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BHMG1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BHMG1 Gene

Disorders for BHMG1 Gene

Additional Disease Information for BHMG1

No disorders were found for BHMG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BHMG1 Gene

Publications for BHMG1 Gene

  1. Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes. (PMID: 23044541) Gascoigne DK … Mattick JS (Bioinformatics (Oxford, England) 2012) 2 3 58
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 4 58

Products for BHMG1 Gene

Sources for BHMG1 Gene

Content
Loading form....