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Aliases for BGLT3 Gene

Subcategory (RNA class) for BGLT3 Gene


Quality Score for this RNA gene is


Aliases for BGLT3 Gene

  • Beta Globin Locus Transcript 3 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1083 2 3
  • Beta Globin Locus 3 2 3
  • CTD-2643I7.1 3
  • LncRNA-BGL3 3
  • LINC01083 3
  • BGL3 3

External Ids for BGLT3 Gene

ORGUL Members for BGLT3 Gene

Summaries for BGLT3 Gene

GeneCards Summary for BGLT3 Gene

BGLT3 (Beta Globin Locus Transcript 3 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BGLT3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BGLT3 Gene

Genomics for BGLT3 Gene

GeneHancer (GH) Regulatory Elements for BGLT3 Gene

Promoters and enhancers for BGLT3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I005244 Enhancer 0.7 dbSUPER 550.8 +0.4 369 1.5 MEIS2 LEF1 NFATC3 TEAD4 EGR1 POLR2A SIRT6 SOX6 L3MBTL2 SMAD5 BGLT3 GC11M005252 HBBP1 HBG2 HBG1 GC11P005064
GH11I005249 Promoter/Enhancer 1 EPDnew dbSUPER 0.8 -4.3 -4330 0.1 NCOR1 ARNT DPF2 NCOA2 HBG1 BGLT3 GC11P005064
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BGLT3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BGLT3 Gene

Genomic Locations for BGLT3 Gene
994 bases
Minus strand

Genomic View for BGLT3 Gene

Genes around BGLT3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BGLT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BGLT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BGLT3 Gene

Proteins for BGLT3 Gene

Post-translational modifications for BGLT3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BGLT3 Gene

Domains & Families for BGLT3 Gene

Gene Families for BGLT3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BGLT3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BGLT3 Gene

Function for BGLT3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BGLT3 Gene

Localization for BGLT3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BGLT3 Gene

Pathways & Interactions for BGLT3 Gene

SuperPathways for BGLT3 Gene

No Data Available

Interacting Proteins for BGLT3 Gene

Gene Ontology (GO) - Biological Process for BGLT3 Gene


No data available for Pathways by source and SIGNOR curated interactions for BGLT3 Gene

Drugs & Compounds for BGLT3 Gene

No Compound Related Data Available

Transcripts for BGLT3 Gene

mRNA/cDNA for BGLT3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BGLT3 Gene

No ASD Table

Relevant External Links for BGLT3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for BGLT3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BGLT3 Gene

NURSA nuclear receptor signaling pathways regulating expression of BGLT3 Gene:

genes like me logo Genes that share expression patterns with BGLT3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BGLT3 Gene

Orthologs for BGLT3 Gene

Evolution for BGLT3 Gene

Gene Tree for BGLT3 (if available)
Gene Tree for BGLT3 (if available)

No data available for Orthologs for BGLT3 Gene

Paralogs for BGLT3 Gene

No data available for Paralogs for BGLT3 Gene

Variants for BGLT3 Gene

Sequence variations from dbSNP and Humsavar for BGLT3 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1003168756 -- 5,246,602(-) C/A upstream_transcript_variant
rs1003204981 -- 5,246,746(-) A/T upstream_transcript_variant
rs1003259453 -- 5,246,521(-) TAAATTAAATTAAA/TAAATTAAA upstream_transcript_variant
rs1004424824 -- 5,246,500(-) C/G upstream_transcript_variant
rs1004671310 -- 5,245,979(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for BGLT3 Gene

Variant ID Type Subtype PubMed ID
dgv1041n100 CNV loss 25217958
dgv183e214 CNV loss 21293372
nsv1036997 CNV gain 25217958

Additional Variant Information for BGLT3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BGLT3 Gene

Disorders for BGLT3 Gene

Additional Disease Information for BGLT3

No disorders were found for BGLT3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BGLT3 Gene

Publications for BGLT3 Gene

  1. A long noncoding RNA critically regulates Bcr-Abl-mediated cellular transformation by acting as a competitive endogenous RNA. (PMID: 24837367) Guo G … Chen JL (Oncogene 2015) 2 3 58
  2. A signature motif mediating selective interactions of BCL11A with the NR2E/F subfamily of orphan nuclear receptors. (PMID: 23975195) Chan CM … Heery DM (Nucleic acids research 2013) 2 3 58
  3. Distinct Ldb1/NLI complexes orchestrate γ-globin repression and reactivation through ETO2 in human adult erythroid cells. (PMID: 22010104) Kiefer CM … Dean A (Blood 2011) 2 3 58
  4. Real-time PCR for single-cell genotyping in sickle cell and thalassemia syndromes as a rapid, accurate, reliable, and widely applicable protocol for preimplantation genetic diagnosis. (PMID: 15108284) Vrettou C … Kanavakis E (Human mutation 2004) 3 58

Products for BGLT3 Gene

Sources for BGLT3 Gene

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