Aliases for BGLT3 Gene

Subcategory (RNA class) for BGLT3 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for BGLT3 Gene

  • Beta Globin Locus Transcript 3 2 3 5
  • BGLT3 2 5 165
  • Beta Globin Locus Transcript 3 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1083 2 3
  • Beta Globin Locus 3 2 3
  • LncRNA-BGL3 2 3
  • LINC01083 2 3
  • BGL3 2 3
  • NONHSAG007504.2 91
  • HSALNG0082362 164
  • CTD-2643I7.1 3

External Ids for BGLT3 Gene

Summaries for BGLT3 Gene

GeneCards Summary for BGLT3 Gene

BGLT3 (Beta Globin Locus Transcript 3) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with BGLT3 include Leukemia, Chronic Myeloid.

Additional gene information for BGLT3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BGLT3 Gene

Genomics for BGLT3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BGLT3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J005242 Enhancer 1 Ensembl dbSUPER 0.7 +4.2 4222 2.8 LEF1 IKZF1 DDX20 MTA2 ZNF740 HDAC1 SOX6 MGA THRA CBX3 HBBP1 HBD HBG2 TRIM68 HBG1 BGLT3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BGLT3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BGLT3 Gene

Genomic Locations for BGLT3 Gene
chr11:5,244,553-5,248,223
(GRCh38/hg38)
Size:
3,671 bases
Orientation:
Minus strand
chr11:5,265,784-5,266,777
(GRCh37/hg19)
Size:
994 bases
Orientation:
Minus strand

Genomic View for BGLT3 Gene

Genes around BGLT3 on UCSC Golden Path with GeneCards custom track
BGLT3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
BGLT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BGLT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BGLT3 Gene

Proteins for BGLT3 Gene

No data available for DME Specific Peptides for BGLT3 Gene

Domains & Families for BGLT3 Gene

Gene Families for BGLT3 Gene

genes like me logo Genes that share domains with BGLT3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BGLT3 Gene

Function for BGLT3 Gene

Phenotypes From GWAS Catalog for BGLT3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BGLT3 Gene

Localization for BGLT3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BGLT3 gene
Compartment Confidence
plasma membrane 1
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BGLT3 Gene

Pathways & Interactions for BGLT3 Gene

PathCards logo

SuperPathways for BGLT3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BGLT3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BGLT3 Gene

Drugs & Compounds for BGLT3 Gene

(1) Drugs for BGLT3 Gene - From: DrugBank

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Furan Approved, Experimental, Investigational Pharma Target 0
genes like me logo Genes that share compounds with BGLT3: view

Transcripts for BGLT3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BGLT3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A80B_9606 lncRNA 993 2

HGNC: 49033,

RefSeq: NR_121648,

URS0000D5A352_9606 lncRNA 993 2

Ensembl: ENST00000564523 (view in UCSC) ,

LNCipedia: BGLT3:2,

URS0000049FF4_9606 lncRNA 994 2

LNCipedia: BGLT3:1,

NONCODE: NONHSAT017669.2,

URS00007CC20E_9606 other 3670 1

ENA: KF110790.1:1..3696:ncRNA,

URS0000EAFDEB_9606 lncRNA 994 1

LncBook: HSALNT0288894,

BGLT3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for BGLT3 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for BGLT3 Gene

No ASD Table

Relevant External Links for BGLT3 Gene

GeneLoc Exon Structure for
BGLT3

Expression for BGLT3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BGLT3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BGLT3

genes like me logo Genes that share expression patterns with BGLT3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BGLT3 Gene

Orthologs for BGLT3 Gene

Evolution for BGLT3 Gene

ENSEMBL:
Gene Tree for BGLT3 (if available)
TreeFam:
Gene Tree for BGLT3 (if available)

No data available for Orthologs for BGLT3 Gene

Paralogs for BGLT3 Gene

No data available for Paralogs for BGLT3 Gene

Variants for BGLT3 Gene

Additional dbSNP identifiers (rs#s) for BGLT3 Gene

Structural Variations from Database of Genomic Variants (DGV) for BGLT3 Gene

Variant ID Type Subtype PubMed ID
dgv1041n100 CNV loss 25217958
dgv183e214 CNV loss 21293372
nsv1036997 CNV gain 25217958

Additional Variant Information for BGLT3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BGLT3

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for BGLT3 Gene

Disorders for BGLT3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for BGLT3 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
leukemia, chronic myeloid
  • cml
- elite association - COSMIC cancer census association via MalaCards
Search BGLT3 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for BGLT3

genes like me logo Genes that share disorders with BGLT3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BGLT3 Gene

Publications for BGLT3 Gene

  1. A long noncoding RNA critically regulates Bcr-Abl-mediated cellular transformation by acting as a competitive endogenous RNA. (PMID: 24837367) Guo G … Chen JL (Oncogene 2015) 2 3
  2. A signature motif mediating selective interactions of BCL11A with the NR2E/F subfamily of orphan nuclear receptors. (PMID: 23975195) Chan CM … Heery DM (Nucleic acids research 2013) 2 3
  3. Distinct Ldb1/NLI complexes orchestrate γ-globin repression and reactivation through ETO2 in human adult erythroid cells. (PMID: 22010104) Kiefer CM … Dean A (Blood 2011) 2 3
  4. Real-time PCR for single-cell genotyping in sickle cell and thalassemia syndromes as a rapid, accurate, reliable, and widely applicable protocol for preimplantation genetic diagnosis. (PMID: 15108284) Vrettou C … Kanavakis E (Human mutation 2004) 3

Products for BGLT3 Gene

Sources for BGLT3 Gene