Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BFSP2-AS1 Gene

Subcategory (RNA class) for BFSP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for BFSP2-AS1 Gene

  • BFSP2 Antisense RNA 1 2 3 5

External Ids for BFSP2-AS1 Gene

Previous GeneCards Identifiers for BFSP2-AS1 Gene

  • GC03M133149

Summaries for BFSP2-AS1 Gene

GeneCards Summary for BFSP2-AS1 Gene

BFSP2-AS1 (BFSP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with BFSP2-AS1 include Cataract 12, Multiple Types.

Additional gene information for BFSP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BFSP2-AS1 Gene

Genomics for BFSP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for BFSP2-AS1 Gene

Promoters and enhancers for BFSP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J133505 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -50.3 -50298 1.7 HDGF PKNOX1 FOXA2 IRF4 RAD21 RARA ZNF207 ZNF143 ATF7 ETV6 BFSP2-AS1 CDV3 GC03P133492 ENSG00000272832
GH03J133499 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 11.9 -43.2 -43185 0.2 ELF3 FOXA2 ARID4B THRB ZSCAN9 RARA ZNF614 CREM THAP11 SP5 ENSG00000250983 ENSG00000201827 BFSP2-AS1 GC03P133492 ENSG00000272832
GH03J133473 Enhancer 1.2 Ensembl ENCODE dbSUPER 12 -20.3 -20263 5.5 PKNOX1 BATF ATF7 ETV6 BCLAF1 IKZF2 RUNX3 CREM RXRA CBFB GC03P133475 GC03P133476 BFSP2 BFSP2-AS1 ENSG00000250983 ENSG00000201827 CDV3 TFP1 TOPBP1 GC03P133482
GH03J133488 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.7 -34.9 -34876 4.9 PKNOX1 STAT5A BATF IRF4 RFX5 ZNF143 ATF7 ETV6 BCLAF1 IKZF2 GC03P133492 LOC391578 CDV3 BFSP2-AS1 TOPBP1 TFP1 BFSP2 ENSG00000272832
GH03J133479 Enhancer 1.1 Ensembl ENCODE dbSUPER 12 -23.9 -23919 1.2 HDGF PKNOX1 MZF1 FEZF1 ZIC2 RFX5 POLR2A EED PRDM10 KLF8 BFSP2-AS1 ENSG00000250983 ENSG00000201827 CDV3 TFP1 TOPBP1 BFSP2 GC03P133482 GC03P133475 GC03P133476
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BFSP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BFSP2-AS1 Gene

Genomic Locations for BFSP2-AS1 Gene
chr3:133,429,269-133,456,237
(GRCh38/hg38)
Size:
26,969 bases
Orientation:
Minus strand
chr3:133,148,113-133,174,620
(GRCh37/hg19)

Genomic View for BFSP2-AS1 Gene

Genes around BFSP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BFSP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BFSP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BFSP2-AS1 Gene

Proteins for BFSP2-AS1 Gene

Post-translational modifications for BFSP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BFSP2-AS1 Gene

Domains & Families for BFSP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BFSP2-AS1 Gene

Function for BFSP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BFSP2-AS1 Gene

Localization for BFSP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BFSP2-AS1 Gene

Pathways & Interactions for BFSP2-AS1 Gene

SuperPathways for BFSP2-AS1 Gene

No Data Available

Interacting Proteins for BFSP2-AS1 Gene

Gene Ontology (GO) - Biological Process for BFSP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BFSP2-AS1 Gene

Drugs & Compounds for BFSP2-AS1 Gene

No Compound Related Data Available

Transcripts for BFSP2-AS1 Gene

mRNA/cDNA for BFSP2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BFSP2-AS1 Gene

No ASD Table

Relevant External Links for BFSP2-AS1 Gene

GeneLoc Exon Structure for
BFSP2-AS1
ECgene alternative splicing isoforms for
BFSP2-AS1

Expression for BFSP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BFSP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for BFSP2-AS1 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (x11.9).
genes like me logo Genes that share expression patterns with BFSP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BFSP2-AS1 Gene

Orthologs for BFSP2-AS1 Gene

Evolution for BFSP2-AS1 Gene

ENSEMBL:
Gene Tree for BFSP2-AS1 (if available)
TreeFam:
Gene Tree for BFSP2-AS1 (if available)

No data available for Orthologs for BFSP2-AS1 Gene

Paralogs for BFSP2-AS1 Gene

No data available for Paralogs for BFSP2-AS1 Gene

Variants for BFSP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for BFSP2-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs104893685 pathogenic, not-provided, Cataract 12, multiple types, not provided 133,450,432(-) C/A/T intron_variant
rs121908938 pathogenic, not-provided, Cataract 12, multiple types, not provided 133,448,608(-) AAGAAGAA/AAGAA intron_variant
rs139190094 likely-benign, Cataract 133,475,111(-) GG/G genic_upstream_transcript_variant, intron_variant
rs145444931 uncertain-significance, Cataract 133,450,438(-) G/A intron_variant
rs146972354 likely-benign, Cataract 12, multiple types 133,466,890(-) G/T genic_upstream_transcript_variant, intron_variant

Additional Variant Information for BFSP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BFSP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BFSP2-AS1 Gene

Disorders for BFSP2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for BFSP2-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
cataract 12, multiple types
  • ctrct12
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for BFSP2-AS1

genes like me logo Genes that share disorders with BFSP2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BFSP2-AS1 Gene

Publications for BFSP2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58

Products for BFSP2-AS1 Gene

Sources for BFSP2-AS1 Gene

Content
Loading form....