Aliases for BEND3P3 Gene

Aliases for BEND3P3 Gene

  • BEN Domain Containing 3 Pseudogene 3 2 3 5
  • BEND3P3 5

External Ids for BEND3P3 Gene

Previous GeneCards Identifiers for BEND3P3 Gene

  • GC10P081443
  • GC10P081555
  • GC10P080038
  • GC10P080063
  • GC10P081970
  • GC10P082134
  • GC10P082168
  • GC10P083211
  • GC10P080087
  • GC10P080110
  • GC10P080135
  • GC10P080157
  • GC10P080358
  • GC10P080379
  • GC10P081538
  • GC10P081860

Summaries for BEND3P3 Gene

GeneCards Summary for BEND3P3 Gene

BEND3P3 (BEN Domain Containing 3 Pseudogene 3) is a Pseudogene.

Additional gene information for BEND3P3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BEND3P3 Gene

Genomics for BEND3P3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BEND3P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J079684 Promoter 0.7 Ensembl 600.7 +1.9 1926 1 RFX1 CTCF ZNF444 SIN3A KLF9 RFX5 RAD21 MNT CREB1 ENSG00000224886 BEND3P3 ENSG00000280355 lnc-NUTM2B-2 piR-31914 piR-38261-002 piR-40044-002 piR-48881-002 piR-56386-002 piR-47094
GH10J079674 Enhancer 0.3 Ensembl 0.4 -7.7 -7675 0.2 RAD51 BEND3P3 LOC101929506 lnc-NUTM2B-2 ENSG00000244733 NUTM2B SFTPA1 NUTM2B-AS1
GH10J079669 Enhancer 0.3 Ensembl 0.4 -13.9 -13874 1.4 PKNOX1 NUTM2E MBL1P LOC101929506 ENSG00000244733 BEND3P3 lnc-NUTM2B-2 NUTM2B SFTPA1 NUTM2B-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BEND3P3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BEND3P3 Gene

Genomic Locations for BEND3P3 Gene
chr10:79,682,975-79,688,897
(GRCh38/hg38)
Size:
5,923 bases
Orientation:
Plus strand
chr10:81,442,731-81,448,653
(GRCh37/hg19)
Size:
5,923 bases
Orientation:
Plus strand

Genomic View for BEND3P3 Gene

Genes around BEND3P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BEND3P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BEND3P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BEND3P3 Gene

Proteins for BEND3P3 Gene

Post-translational modifications for BEND3P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BEND3P3 Gene

Domains & Families for BEND3P3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BEND3P3 Gene

Function for BEND3P3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BEND3P3 Gene

Localization for BEND3P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BEND3P3 Gene

Pathways & Interactions for BEND3P3 Gene

PathCards logo

SuperPathways for BEND3P3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BEND3P3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BEND3P3 Gene

Drugs & Compounds for BEND3P3 Gene

No Compound Related Data Available

Transcripts for BEND3P3 Gene

mRNA/cDNA for BEND3P3 Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BEND3P3 Gene

No ASD Table

Relevant External Links for BEND3P3 Gene

GeneLoc Exon Structure for
BEND3P3

Expression for BEND3P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BEND3P3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BEND3P3

SOURCE GeneReport for Unigene cluster for BEND3P3 Gene:

Hs.730022
genes like me logo Genes that share expression patterns with BEND3P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BEND3P3 Gene

Orthologs for BEND3P3 Gene

Evolution for BEND3P3 Gene

ENSEMBL:
Gene Tree for BEND3P3 (if available)
TreeFam:
Gene Tree for BEND3P3 (if available)

No data available for Orthologs for BEND3P3 Gene

Paralogs for BEND3P3 Gene

No data available for Paralogs for BEND3P3 Gene

Variants for BEND3P3 Gene

Structural Variations from Database of Genomic Variants (DGV) for BEND3P3 Gene

Variant ID Type Subtype PubMed ID
dgv255e212 CNV loss 25503493
esv2738707 CNV deletion 23290073
esv2738718 CNV deletion 23290073
esv3578984 CNV loss 25503493
esv3623921 CNV loss 21293372
nsv1141879 OTHER inversion 24896259
nsv436110 CNV deletion 17901297
nsv948085 CNV duplication 23825009

Additional Variant Information for BEND3P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BEND3P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for BEND3P3 Gene

Disorders for BEND3P3 Gene

Additional Disease Information for BEND3P3

No disorders were found for BEND3P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BEND3P3 Gene

Publications for BEND3P3 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for BEND3P3 Gene

Sources for BEND3P3 Gene