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Aliases for BEAN1-AS1 Gene

Subcategory (RNA class) for BEAN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BEAN1-AS1 Gene

  • BEAN1 Antisense RNA 1 2 3 5
  • CTD-2258A20.5 3

External Ids for BEAN1-AS1 Gene

Summaries for BEAN1-AS1 Gene

GeneCards Summary for BEAN1-AS1 Gene

BEAN1-AS1 (BEAN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BEAN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BEAN1-AS1 Gene

Genomics for BEAN1-AS1 Gene

GeneHancer (GH) Regulatory Elements for BEAN1-AS1 Gene

Promoters and enhancers for BEAN1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I066480 Enhancer 0.5 ENCODE 560 +0.5 534 1.3 ZFP64 KDM1A PAX8 FOS ZBTB20 BEAN1-AS1 BEAN1 GC16M066468 PIR55464 ENSG00000260851
GH16I066547 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 18.5 -69.8 -69821 6.6 MLX ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF416 ZNF143 SP3 NFYC TK2 PIR51465 PIR54425 ENSG00000275745 ENSG00000261519 CKLF-CMTM1 CKLF NAE1 ZDHHC1 BEAN1
GH16I066510 Enhancer 1.3 Ensembl ENCODE dbSUPER 17.1 -30.9 -30937 3.8 PKNOX1 FOXA2 ARID4B SIN3A ETS1 TCF12 ELK1 ATF7 FOS RXRA GC16M066512 PIR55233 PIR49300 BEAN1 TK2 BEAN1-AS1 CKLF CKLF-CMTM1 CMTM2 CES4A
GH16I066541 Enhancer 0.3 dbSUPER 18.3 -61.5 -61473 2.5 SCRT2 BEAN1 BEAN1-AS1 CMTM2 TK2 ENSG00000261519 ENSG00000260851
GH16I066476 Enhancer 0.5 ENCODE 7.4 +3.9 3920 1.8 BCOR PKNOX1 POLR2A ZNF239 ZFP36 ZMYM3 EBF1 TK2 BEAN1-AS1 PIR55464 GC16M066468 ENSG00000260851 BEAN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BEAN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BEAN1-AS1 Gene

Genomic Locations for BEAN1-AS1 Gene
chr16:66,469,796-66,481,230
(GRCh38/hg38)
Size:
11,435 bases
Orientation:
Minus strand
chr16:66,503,699-66,515,133
(GRCh37/hg19)

Genomic View for BEAN1-AS1 Gene

Genes around BEAN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BEAN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BEAN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BEAN1-AS1 Gene

Proteins for BEAN1-AS1 Gene

Post-translational modifications for BEAN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BEAN1-AS1 Gene

Domains & Families for BEAN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BEAN1-AS1 Gene

Function for BEAN1-AS1 Gene

Phenotypes From GWAS Catalog for BEAN1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BEAN1-AS1 Gene

Localization for BEAN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BEAN1-AS1 Gene

Pathways & Interactions for BEAN1-AS1 Gene

SuperPathways for BEAN1-AS1 Gene

No Data Available

Interacting Proteins for BEAN1-AS1 Gene

Gene Ontology (GO) - Biological Process for BEAN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BEAN1-AS1 Gene

Drugs & Compounds for BEAN1-AS1 Gene

No Compound Related Data Available

Transcripts for BEAN1-AS1 Gene

mRNA/cDNA for BEAN1-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BEAN1-AS1 Gene

No ASD Table

Relevant External Links for BEAN1-AS1 Gene

GeneLoc Exon Structure for
BEAN1-AS1
ECgene alternative splicing isoforms for
BEAN1-AS1

Expression for BEAN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BEAN1-AS1 Gene

genes like me logo Genes that share expression patterns with BEAN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BEAN1-AS1 Gene

Orthologs for BEAN1-AS1 Gene

Evolution for BEAN1-AS1 Gene

ENSEMBL:
Gene Tree for BEAN1-AS1 (if available)
TreeFam:
Gene Tree for BEAN1-AS1 (if available)

No data available for Orthologs for BEAN1-AS1 Gene

Paralogs for BEAN1-AS1 Gene

No data available for Paralogs for BEAN1-AS1 Gene

Variants for BEAN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for BEAN1-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000424079 -- 66,472,856(-) C/A intron_variant
rs1000649923 -- 66,473,545(-) G/A intron_variant
rs1000756109 -- 66,474,086(-) T/C intron_variant
rs1001325719 -- 66,472,905(-) C/T intron_variant
rs1001544561 -- 66,473,168(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BEAN1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833264 CNV gain 17160897

Additional Variant Information for BEAN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BEAN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BEAN1-AS1 Gene

Disorders for BEAN1-AS1 Gene

Additional Disease Information for BEAN1-AS1

No disorders were found for BEAN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BEAN1-AS1 Gene

Publications for BEAN1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for BEAN1-AS1 Gene

Sources for BEAN1-AS1 Gene

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