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Aliases for BDP1P Gene
Aliases for BDP1P Gene
External Ids for BDP1P Gene
- HGNC: 31044
- NCBI Entrez Gene: 724038
- Ensembl: ENSG00000264736
Previous GeneCards Identifiers for BDP1P Gene
- GC18U900409
- GC18M073274
- GC18M075144
- GC18M077433
- GC18M077434
- GC18M077444
- GC18M077445
- GC18M077443
- GC18M077442
- GC18M077435
- GC18M077436
- GC18M077438
- GC18M077439
- GC18M077440
Summaries for BDP1P Gene
GeneCards Summary for BDP1P Gene
BDP1P (B Double Prime 1 Pseudogene) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BDP1P Gene
Genomics for BDP1P Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for BDP1P Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH18J077437 | Enhancer | 0.2 | FANTOM5 | 250.7 | 0.0 | -6 | 0.3 | BDP1P lnc-MBP-8 ENSG00000264015 HSALNG0122640 lnc-GALR1-1 GALR1 | ||
| GH18J077432 | Enhancer | 0.2 | Ensembl | 0.7 | +4.2 | 4247 | 0.8 | ENSG00000199392 ZNF236 BDP1P lnc-MBP-8 ENSG00000264015 lnc-GALR1-1 GALR1 | ||
| GH18J077447 | Enhancer | 0.2 | Ensembl | 0.4 | -10.9 | -10853 | 0.6 | BDP1P HSALNG0122640 ENSG00000264015 lnc-GALR1-1 GALR1 | ||
| GH18J077461 | Enhancer | 0.2 | Ensembl | 0.3 | -24.2 | -24153 | 0.4 | BDP1P HSALNG0122640 ENSG00000264015 GALR1 | ||
| GH18J077457 | Enhancer | 0.2 | Ensembl | 0.3 | -21.2 | -21153 | 0.4 | BDP1P HSALNG0122640 ENSG00000264015 GALR1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around BDP1P on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for BDP1P Gene
Latest Assembly
- chr18:77,432,057-77,437,248
- (GRCh38/hg38)
- Size:
- 5,192 bases
- Orientation:
- Minus strand
Previous Assembly
- chr18:75,144,013-75,149,204
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 5,192 bases
- Orientation:
- Minus strand
- chr18:75,147,209-75,149,198
- (GRCh37/hg19 by Ensembl)
- Size:
- 1,990 bases
- Orientation:
- Minus strand
Genomic View for BDP1P Gene
Genes around BDP1P on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 18q23 by HGNC
- 18q23 by Entrez Gene
- 18q23 by Ensembl
BDP1P Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for BDP1P Gene
Proteins for BDP1P Gene
Post-translational modifications for BDP1P Gene
No Post-translational modifications
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for BDP1P
- Origene Custom Protein Services for BDP1P
Assay products for research
No data available for DME Specific Peptides for BDP1P Gene
Domains & Families for BDP1P Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BDP1P Gene
Function for BDP1P Gene
Phenotypes From GWAS Catalog for BDP1P Gene
Animal Models for research
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for BDP1P - Starting at $85 >
- * BDP1P CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Browse CRISPR knockouts for BDP1P
miRNA products for research
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for BDP1P - Starting at $45 >
- * BDP1P as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BDP1P Gene
Localization for BDP1P Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BDP1P Gene
Transcripts for BDP1P Gene
mRNA/cDNA for BDP1P Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000582658 1990 nts (view in UCSC)
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for BDP1P - Starting at $85 >
- * BDP1P CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Browse CRISPR knockouts for BDP1P
miRNA products for research
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for BDP1P - Starting at $45 >
- * BDP1P as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for BDP1P Gene
- GeneLoc Exon Structure for
- BDP1P
Expression for BDP1P Gene
Primer products for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BDP1P Gene
Orthologs for BDP1P Gene
No data available for Orthologs for BDP1P Gene
Paralogs for BDP1P Gene
No data available for Paralogs for BDP1P Gene
Variants for BDP1P Gene
Additional Variant Information for BDP1P Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- BDP1P
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BDP1P Gene
Disorders for BDP1P Gene
Additional Disease Information for BDP1P
- Genetic Association Database
- (GAD)
No disorders were found for BDP1P Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BDP1P Gene
Publications for BDP1P Gene
- A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network. (PMID: 22228203) Aslibekyan S … Arnett DK (Pharmacogenetics and genomics 2012) 41
- Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility. (PMID: 18668548) Julià A … Marsal S (Arthritis and rheumatism 2008) 41
- A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 41
ExternalLinks
Products for BDP1P Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for BDP1P
- Origene Custom Protein Services for BDP1P
- Browse OriGene Inhibitory RNA Products For BDP1P
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for BDP1P
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For BDP1P
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for BDP1P
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for BDP1P
- Search GeneCopoeia for miRNA 3'UTR Target clone products for BDP1P
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for BDP1P
Sources for BDP1P Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB