Aliases for BCRP3 Gene

Aliases for BCRP3 Gene

  • BCR Pseudogene 3 2 3 5
  • Breakpoint Cluster Region Pseudogene 3 2 3
  • Breakpoint Cluster Region-Like 6 2 3
  • Breakpoint Cluster Region-Like 3 2 3
  • BCRL3 3
  • BCRL6 3
  • BCRP3 5
  • BCR3 3

External Ids for BCRP3 Gene

Previous HGNC Symbols for BCRP3 Gene

  • BCR3
  • BCRL6
  • BCRL3

Previous GeneCards Identifiers for BCRP3 Gene

  • GC22P025030

Summaries for BCRP3 Gene

GeneCards Summary for BCRP3 Gene

BCRP3 (BCR Pseudogene 3) is a Pseudogene. Diseases associated with BCRP3 include Lung Cancer Susceptibility 3.

Additional gene information for BCRP3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BCRP3 Gene

Genomics for BCRP3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BCRP3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BCRP3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BCRP3 Gene

Genomic Locations for BCRP3 Gene
chr22:24,632,915-24,653,360
(GRCh38/hg38)
Size:
20,446 bases
Orientation:
Plus strand
chr22:25,028,882-25,049,327
(GRCh37/hg19)
Size:
20,446 bases
Orientation:
Plus strand

Genomic View for BCRP3 Gene

Genes around BCRP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCRP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCRP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCRP3 Gene

Proteins for BCRP3 Gene

No data available for DME Specific Peptides for BCRP3 Gene

Domains & Families for BCRP3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BCRP3 Gene

Function for BCRP3 Gene

Phenotypes From GWAS Catalog for BCRP3 Gene

Phenotypes for BCRP3 Gene

GenomeRNAi human phenotypes for BCRP3:
genes like me logo Genes that share phenotypes with BCRP3: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BCRP3 Gene

Localization for BCRP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BCRP3 Gene

Pathways & Interactions for BCRP3 Gene

PathCards logo

SuperPathways for BCRP3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BCRP3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BCRP3 Gene

Drugs & Compounds for BCRP3 Gene

No Compound Related Data Available

Transcripts for BCRP3 Gene

mRNA/cDNA for BCRP3 Gene

5 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for BCRP3 Gene

No ASD Table

Relevant External Links for BCRP3 Gene

GeneLoc Exon Structure for
BCRP3

Expression for BCRP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BCRP3 Gene

mRNA differential expression in normal tissues according to GTEx for BCRP3 Gene

This gene is overexpressed in Kidney - Cortex (x13.0) and Brain - Cerebellum (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BCRP3

SOURCE GeneReport for Unigene cluster for BCRP3 Gene:

Hs.655234
genes like me logo Genes that share expression patterns with BCRP3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BCRP3 Gene

Orthologs for BCRP3 Gene

Evolution for BCRP3 Gene

ENSEMBL:
Gene Tree for BCRP3 (if available)
TreeFam:
Gene Tree for BCRP3 (if available)

No data available for Orthologs for BCRP3 Gene

Paralogs for BCRP3 Gene

No data available for Paralogs for BCRP3 Gene

Variants for BCRP3 Gene

Structural Variations from Database of Genomic Variants (DGV) for BCRP3 Gene

Variant ID Type Subtype PubMed ID
dgv4528n100 CNV gain 25217958
esv2530395 CNV loss 19546169
esv25356 CNV gain 19812545
esv2659398 CNV deletion 23128226
esv2724041 CNV deletion 23290073
esv2724068 CNV deletion 23290073
esv3575443 CNV gain 25503493
esv3647437 CNV loss 21293372
nsv1055420 CNV loss 25217958
nsv1055830 CNV gain 25217958
nsv1110863 OTHER inversion 24896259
nsv1149688 CNV duplication 26484159
nsv7350 OTHER inversion 18451855
nsv962775 CNV duplication 23825009
nsv962849 CNV duplication 23825009
nsv9884 CNV gain+loss 18304495

Additional Variant Information for BCRP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BCRP3

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for BCRP3 Gene

Disorders for BCRP3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for BCRP3 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
- elite association - COSMIC cancer census association via MalaCards
Search BCRP3 in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with BCRP3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BCRP3 Gene

Publications for BCRP3 Gene

  1. Linear order of the four BCR-related loci in 22q11. (PMID: 3267213) Budarf M … Emanuel BS (Genomics 1988) 2 3
  2. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini AA … Barker JN (Nature communications 2014) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I … O'Brien KP (Nature 1999) 3

Products for BCRP3 Gene

Sources for BCRP3 Gene