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Aliases for BCORP1 Gene

Aliases for BCORP1 Gene

  • BCL6 Corepressor Pseudogene 1 2 3 5
  • BCL-6 Corepressor-Like Protein 2 3 4
  • BCL-6 Corepressor Pseudogene 1 3 4
  • BCL6 Co-Repressor-Like 2 2 3
  • BCL6 Corepressor-Like 2 2 3
  • BCORL2 3 4
  • BCL6 Co-Repressor Pseudogene 3
  • Putative BCoR-Like Protein 2 3
  • BCoR-Like Protein 2 3

External Ids for BCORP1 Gene

Previous HGNC Symbols for BCORP1 Gene

  • BCORL2

Previous GeneCards Identifiers for BCORP1 Gene

  • GC0YM021619

Summaries for BCORP1 Gene

GeneCards Summary for BCORP1 Gene

BCORP1 (BCL6 Corepressor Pseudogene 1) is a Pseudogene.

Additional gene information for BCORP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCORP1 Gene

Genomics for BCORP1 Gene

GeneHancer (GH) Regulatory Elements for BCORP1 Gene

Promoters and enhancers for BCORP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0YI019502 Enhancer 0.3 FANTOM5 550.8 +0.8 819 0.2 EZH2 BCORP1 KDM5D LOC102723934
GH0YI019503 Enhancer 0.3 ENCODE 550.8 -0.2 -217 0.2 CTCF BCORP1 PIR44307
GH0YI019504 Enhancer 0.3 ENCODE 550.8 +0.2 198 0.6 EZH2 BCORP1 LOC102723934
GH0YI019496 Enhancer 0.2 ENCODE 0.8 +5.0 4978 2.4 BCORP1 LOC102723934
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BCORP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BCORP1 Gene

Genomic Locations for BCORP1 Gene
chrY:19,455,431-19,503,153
(GRCh38/hg38)
Size:
47,723 bases
Orientation:
Minus strand
chrY:21,617,317-21,665,039
(GRCh37/hg19)

Genomic View for BCORP1 Gene

Genes around BCORP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCORP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCORP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCORP1 Gene

Proteins for BCORP1 Gene

  • Protein details for BCORP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N888-BCOR2_HUMAN
    Recommended name:
    Putative BCoR-like protein 2
    Protein Accession:
    Q8N888

    Protein attributes for BCORP1 Gene

    Size:
    145 amino acids
    Molecular mass:
    16258 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BCORP1 Gene

Post-translational modifications for BCORP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for BCORP1 Gene

Domains & Families for BCORP1 Gene

Protein Domains for BCORP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for BCORP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N888

UniProtKB/Swiss-Prot:

BCOR2_HUMAN :
  • Belongs to the BCOR family.
Family:
  • Belongs to the BCOR family.
genes like me logo Genes that share domains with BCORP1: view

No data available for Gene Families for BCORP1 Gene

Function for BCORP1 Gene

Phenotypes for BCORP1 Gene

GenomeRNAi human phenotypes for BCORP1:
genes like me logo Genes that share phenotypes with BCORP1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BCORP1 Gene

Localization for BCORP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BCORP1 Gene

Pathways & Interactions for BCORP1 Gene

SuperPathways for BCORP1 Gene

No Data Available

Interacting Proteins for BCORP1 Gene

Gene Ontology (GO) - Biological Process for BCORP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BCORP1 Gene

Drugs & Compounds for BCORP1 Gene

No Compound Related Data Available

Transcripts for BCORP1 Gene

mRNA/cDNA for BCORP1 Gene

(2) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BCORP1 Gene

BCL6 corepressor pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BCORP1 Gene

No ASD Table

Relevant External Links for BCORP1 Gene

GeneLoc Exon Structure for
BCORP1
ECgene alternative splicing isoforms for
BCORP1

Expression for BCORP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BCORP1 Gene

mRNA differential expression in normal tissues according to GTEx for BCORP1 Gene

This gene is overexpressed in Whole Blood (x8.8), Spleen (x7.5), and Small Intestine - Terminal Ileum (x6.9).

NURSA nuclear receptor signaling pathways regulating expression of BCORP1 Gene:

BCORP1

SOURCE GeneReport for Unigene cluster for BCORP1 Gene:

Hs.211713
genes like me logo Genes that share expression patterns with BCORP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BCORP1 Gene

Orthologs for BCORP1 Gene

Evolution for BCORP1 Gene

ENSEMBL:
Gene Tree for BCORP1 (if available)
TreeFam:
Gene Tree for BCORP1 (if available)

No data available for Orthologs for BCORP1 Gene

Paralogs for BCORP1 Gene

(2) SIMAP similar genes for BCORP1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with BCORP1: view

No data available for Paralogs for BCORP1 Gene

Variants for BCORP1 Gene

Sequence variations from dbSNP and Humsavar for BCORP1 Gene

SNP ID Clin Chr 0Y pos Variation AA Info Type
rs1000143432 -- 19,498,685(-) T/C intron_variant
rs1000601769 -- 19,497,316(-) C/G intron_variant
rs1001613428 -- 19,464,073(-) A/G intron_variant
rs1001951831 -- 19,456,315(-) G/A non_coding_transcript_variant
rs1002163952 -- 19,487,026(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BCORP1 Gene

Variant ID Type Subtype PubMed ID
esv3575103 CNV loss 25503493
nsv10025 CNV gain 18304495

Additional Variant Information for BCORP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BCORP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BCORP1 Gene

Disorders for BCORP1 Gene

Additional Disease Information for BCORP1

No disorders were found for BCORP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BCORP1 Gene

Publications for BCORP1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H … Page DC (Nature 2003) 3 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for BCORP1 Gene

Sources for BCORP1 Gene

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