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Aliases for BCDIN3D-AS1 Gene

Subcategory (RNA class) for BCDIN3D-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for BCDIN3D-AS1 Gene

  • BCDIN3D Antisense RNA 1 2 3 5
  • BCDIN3D Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for BCDIN3D-AS1 Gene

Previous GeneCards Identifiers for BCDIN3D-AS1 Gene

  • GC12P050225

Summaries for BCDIN3D-AS1 Gene

GeneCards Summary for BCDIN3D-AS1 Gene

BCDIN3D-AS1 (BCDIN3D Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BCDIN3D-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCDIN3D-AS1 Gene

Genomics for BCDIN3D-AS1 Gene

GeneHancer (GH) Regulatory Elements for BCDIN3D-AS1 Gene

Promoters and enhancers for BCDIN3D-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J048865 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 24.5 -962.3 -962312 2.2 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 RND1 DDX23 KMT2D KANSL2 CCNT1 LOC390314 LMBR1L SENP1 BCDIN3D PRPF40B
GH12J048903 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 24.5 -924.7 -924680 1.6 ZFP64 ARID4B SIN3A ZNF213 ZNF143 RUNX3 RXRA ZC3H11A REST ZNF623 CCDC65 RPL32P27 DDX23 LMBR1L KMT2D BCDIN3D SENP1 LOC390314 CCNT1 KANSL2
GH12J048956 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 15.1 -871.7 -871724 3 HDGF PKNOX1 CLOCK SMAD1 ARID4B NEUROD1 SIN3A FEZF1 ZNF2 YY1 ARF3 ENSG00000272822 CCNT1 KANSL2 LMBR1L LOC390314 DDX23 KMT2D SENP1 PRPF40B
GH12J049129 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.3 -697.2 -697175 4.6 CLOCK MLX FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ENSG00000200309 GC12M049133 TUBA1B DDX23 LMBR1L SMARCD1 KMT2D LOC390314 KANSL2 BCDIN3D
GH12J049823 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -2.0 -2024 6.3 HDGF PKNOX1 CLOCK ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B E2F8 SMARCD1 LMBR1L DDX23 KMT2D BCDIN3D FAIM2 ASIC1 BCDIN3D-AS1 CERS5 TUBA1A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BCDIN3D-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BCDIN3D-AS1 Gene

Genomic Locations for BCDIN3D-AS1 Gene
chr12:49,828,542-49,841,154
(GRCh38/hg38)
Size:
12,613 bases
Orientation:
Plus strand
chr12:50,222,325-50,234,937
(GRCh37/hg19)

Genomic View for BCDIN3D-AS1 Gene

Genes around BCDIN3D-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCDIN3D-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCDIN3D-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCDIN3D-AS1 Gene

Proteins for BCDIN3D-AS1 Gene

Post-translational modifications for BCDIN3D-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BCDIN3D-AS1 Gene

Domains & Families for BCDIN3D-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BCDIN3D-AS1 Gene

Function for BCDIN3D-AS1 Gene

Phenotypes From GWAS Catalog for BCDIN3D-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BCDIN3D-AS1 Gene

Localization for BCDIN3D-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BCDIN3D-AS1 Gene

Pathways & Interactions for BCDIN3D-AS1 Gene

SuperPathways for BCDIN3D-AS1 Gene

No Data Available

Interacting Proteins for BCDIN3D-AS1 Gene

Gene Ontology (GO) - Biological Process for BCDIN3D-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BCDIN3D-AS1 Gene

Drugs & Compounds for BCDIN3D-AS1 Gene

No Compound Related Data Available

Transcripts for BCDIN3D-AS1 Gene

mRNA/cDNA for BCDIN3D-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(6) RNA Central transcripts :

Unigene Clusters for BCDIN3D-AS1 Gene

BCDIN3D antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BCDIN3D-AS1 Gene

No ASD Table

Relevant External Links for BCDIN3D-AS1 Gene

GeneLoc Exon Structure for
BCDIN3D-AS1
ECgene alternative splicing isoforms for
BCDIN3D-AS1

Expression for BCDIN3D-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BCDIN3D-AS1 Gene

SOURCE GeneReport for Unigene cluster for BCDIN3D-AS1 Gene:

Hs.656019
genes like me logo Genes that share expression patterns with BCDIN3D-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BCDIN3D-AS1 Gene

Orthologs for BCDIN3D-AS1 Gene

Evolution for BCDIN3D-AS1 Gene

ENSEMBL:
Gene Tree for BCDIN3D-AS1 (if available)
TreeFam:
Gene Tree for BCDIN3D-AS1 (if available)

No data available for Orthologs for BCDIN3D-AS1 Gene

Paralogs for BCDIN3D-AS1 Gene

No data available for Paralogs for BCDIN3D-AS1 Gene

Variants for BCDIN3D-AS1 Gene

Sequence variations from dbSNP and Humsavar for BCDIN3D-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000020027 -- 49,837,181(+) G/A intron_variant
rs1000858403 -- 49,830,124(+) A/G intron_variant
rs1001322209 -- 49,837,294(+) /G intron_variant
rs1001417899 -- 49,834,912(+) T/A intron_variant
rs1001584820 -- 49,831,186(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BCDIN3D-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv522972 CNV gain 19592680

Additional Variant Information for BCDIN3D-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BCDIN3D-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BCDIN3D-AS1 Gene

Disorders for BCDIN3D-AS1 Gene

Additional Disease Information for BCDIN3D-AS1

No disorders were found for BCDIN3D-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BCDIN3D-AS1 Gene

Publications for BCDIN3D-AS1 Gene

  1. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt SI … Ingelsson E (Nature genetics 2013) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for BCDIN3D-AS1 Gene

Sources for BCDIN3D-AS1 Gene

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