Aliases for BCAR3-AS1 Gene

Subcategory (RNA class) for BCAR3-AS1 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for BCAR3-AS1 Gene

  • BCAR3 Antisense RNA 1 2 3

External Ids for BCAR3-AS1 Gene

Summaries for BCAR3-AS1 Gene

GeneCards Summary for BCAR3-AS1 Gene

BCAR3-AS1 (BCAR3 Antisense RNA 1) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for BCAR3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BCAR3-AS1 Gene

Genomics for BCAR3-AS1 Gene

GeneHancer (GH) Regulatory Elements for BCAR3-AS1 Gene

Promoters and enhancers for BCAR3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J093592 Enhancer 0.2 dbSUPER 750.6 -1.9 -1908 0.3 BCAR3-AS1 NONHSAG002091.2 BCAR3
GH01J093590 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 0.6 +2.1 2071 6.5 LCORL MLX RBPJ POLR2A TCF7L2 NR2F1 NR2F6 MIXL1 MYC NFYC ENSG00000224093 MTF2 EVI5 CCDC18 BCAR3 BCAR3-AS1 piR-48348-001 lnc-DNTTIP2-5
GH01J093578 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -9.5 -9549 8.3 FOXA1 MLX RBPJ ATF1 CREB1 NFYC RAD21 MNT NFIB RERE BCAR3 CCDC18-AS1 ENSG00000224093 BCAR3-AS1 NONHSAG002091.2
GH01J093588 Enhancer 0.6 Ensembl dbSUPER 0.6 -3.4 -3367 0.8 MAX JUN JUND GLIS1 BCAR3 BCAR3-AS1 NONHSAG002091.2
GH01J093574 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -16.1 -16134 2.9 POLR2A RCOR1 BCAR3 CCDC18-AS1 NONHSAG002091.2 BCAR3-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BCAR3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BCAR3-AS1 Gene

Genomic Locations for BCAR3-AS1 Gene
chr1:93,591,968-93,600,030
(GRCh38/hg38)
Size:
8,063 bases
Orientation:
Plus strand

Genomic View for BCAR3-AS1 Gene

Genes around BCAR3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCAR3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCAR3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCAR3-AS1 Gene

Proteins for BCAR3-AS1 Gene

Post-translational modifications for BCAR3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BCAR3-AS1 Gene

Domains & Families for BCAR3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BCAR3-AS1 Gene

Function for BCAR3-AS1 Gene

Phenotypes From GWAS Catalog for BCAR3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BCAR3-AS1 Gene

Localization for BCAR3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BCAR3-AS1 Gene

Pathways & Interactions for BCAR3-AS1 Gene

PathCards logo

SuperPathways for BCAR3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BCAR3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BCAR3-AS1 Gene

Drugs & Compounds for BCAR3-AS1 Gene

No Compound Related Data Available

Transcripts for BCAR3-AS1 Gene

mRNA/cDNA for BCAR3-AS1 Gene

(2) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for BCAR3-AS1 Gene

No ASD Table

Relevant External Links for BCAR3-AS1 Gene

GeneLoc Exon Structure for
BCAR3-AS1
ECgene alternative splicing isoforms for
BCAR3-AS1

Expression for BCAR3-AS1 Gene

SOURCE GeneReport for Unigene cluster for BCAR3-AS1 Gene:

Hs.729244
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BCAR3-AS1 Gene

Orthologs for BCAR3-AS1 Gene

No data available for Orthologs and Evolution for BCAR3-AS1 Gene

Paralogs for BCAR3-AS1 Gene

No data available for Paralogs for BCAR3-AS1 Gene

Variants for BCAR3-AS1 Gene

Sequence variations from dbSNP and Humsavar for BCAR3-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000144832 -- 93,596,170(+) T/C intron_variant
rs1000245174 -- 93,596,595(+) C/A intron_variant
rs1000398363 -- 93,598,975(+) C/T non_coding_transcript_variant
rs1000462856 -- 93,593,369(+) A/ intron_variant
rs1000578292 -- 93,593,101(+) T/C intron_variant

Additional Variant Information for BCAR3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BCAR3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BCAR3-AS1 Gene

Disorders for BCAR3-AS1 Gene

No disorders were found for BCAR3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for BCAR3-AS1 Gene

Publications for BCAR3-AS1 Gene

No publications were found for BCAR3-AS1 Gene.

No data available for External Links for BCAR3-AS1 Gene

Products for BCAR3-AS1 Gene

Sources for BCAR3-AS1 Gene