Aliases for BBOX1-AS1 Gene

Subcategory (RNA class) for BBOX1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for BBOX1-AS1 Gene

  • BBOX1 Antisense RNA 1 2 3 5
  • BBOX1-AS1 2 168
  • HSALNG0083285 167
  • NONHSAG007888 92

External Ids for BBOX1-AS1 Gene

Summaries for BBOX1-AS1 Gene

GeneCards Summary for BBOX1-AS1 Gene

BBOX1-AS1 (BBOX1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BBOX1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BBOX1-AS1 Gene

Genomics for BBOX1-AS1 Gene

GeneHancer (GH) Regulatory Elements for BBOX1-AS1 Gene

Promoters and enhancers for BBOX1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BBOX1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BBOX1-AS1 Gene

Genomic Locations for BBOX1-AS1 Gene
chr11:27,046,995-27,234,164
(GRCh38/hg38)
Size:
187,170 bases
Orientation:
Minus strand
chr11:27,068,733-27,241,660
(GRCh37/hg19)
Size:
172,928 bases
Orientation:
Minus strand

Genomic View for BBOX1-AS1 Gene

Genes around BBOX1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BBOX1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BBOX1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BBOX1-AS1 Gene

Proteins for BBOX1-AS1 Gene

Post-translational modifications for BBOX1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BBOX1-AS1 Gene

Domains & Families for BBOX1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BBOX1-AS1 Gene

Function for BBOX1-AS1 Gene

Phenotypes From GWAS Catalog for BBOX1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BBOX1-AS1 Gene

Localization for BBOX1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BBOX1-AS1 Gene

Pathways & Interactions for BBOX1-AS1 Gene

PathCards logo

SuperPathways for BBOX1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for BBOX1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BBOX1-AS1 Gene

Drugs & Compounds for BBOX1-AS1 Gene

No Compound Related Data Available

Transcripts for BBOX1-AS1 Gene

mRNA/cDNA for BBOX1-AS1 Gene

12 RNACentral transcripts :
3 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
7 LncBook transcripts :
12 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for BBOX1-AS1 Gene

No ASD Table

Relevant External Links for BBOX1-AS1 Gene

GeneLoc Exon Structure for
BBOX1-AS1

Expression for BBOX1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BBOX1-AS1 Gene

genes like me logo Genes that share expression patterns with BBOX1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BBOX1-AS1 Gene

Orthologs for BBOX1-AS1 Gene

Evolution for BBOX1-AS1 Gene

ENSEMBL:
Gene Tree for BBOX1-AS1 (if available)
TreeFam:
Gene Tree for BBOX1-AS1 (if available)

No data available for Orthologs for BBOX1-AS1 Gene

Paralogs for BBOX1-AS1 Gene

No data available for Paralogs for BBOX1-AS1 Gene

Variants for BBOX1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for BBOX1-AS1 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
735727 Benign: not provided 27,093,232(-) T/C SYNONYMOUS_VARIANT
778515 Benign: not provided 27,125,747(-) T/C SYNONYMOUS_VARIANT
780965 Benign: not provided 27,115,539(-) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for BBOX1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for BBOX1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1727n54 CNV gain 21841781
esv3625759 CNV gain 21293372
esv3625760 CNV gain 21293372
esv3625763 CNV loss 21293372
esv3625764 CNV gain 21293372
esv3625765 CNV loss 21293372
esv3891957 CNV gain 25118596
nsv1145510 CNV deletion 24896259
nsv467782 CNV gain 19166990
nsv508619 CNV deletion 20534489
nsv553914 CNV gain 21841781
nsv7720 CNV deletion 18451855

Additional Variant Information for BBOX1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BBOX1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BBOX1-AS1 Gene

Disorders for BBOX1-AS1 Gene

Additional Disease Information for BBOX1-AS1

No disorders were found for BBOX1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BBOX1-AS1 Gene

Publications for BBOX1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. BBOX1-AS1 contributes to colorectal cancer progression by sponging hsa-miR-361-3p and targeting SH2B1. (PMID: 31984680) Liu J … Luo J (FEBS open bio 2020) 3

Products for BBOX1-AS1 Gene

Sources for BBOX1-AS1 Gene