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Aliases for BBOX1-AS1 Gene

Subcategory (RNA class) for BBOX1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BBOX1-AS1 Gene

  • BBOX1 Antisense RNA 1 2 3 5

External Ids for BBOX1-AS1 Gene

Summaries for BBOX1-AS1 Gene

GeneCards Summary for BBOX1-AS1 Gene

BBOX1-AS1 (BBOX1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BBOX1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BBOX1-AS1 Gene

Genomics for BBOX1-AS1 Gene

GeneHancer (GH) Regulatory Elements for BBOX1-AS1 Gene

Promoters and enhancers for BBOX1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I027233 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 6.7 -14.3 -14294 2.3 HDGF SMAD1 FEZF1 DMAP1 ZNF2 IRF4 ZNF213 ZNF207 ZNF143 FOS LOC105376671 BBOX1-AS1 LOC105376600 LOC105376601
GH11I027208 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 6.6 +10.3 10283 3.1 ATF1 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 ZNF2 TCF12 GLIS2 ZNF213 BBOX1-AS1 LIN7C LOC105376600 GC11P027127
GH11I027211 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 7 +4.4 4371 8 PKNOX1 INSM2 KLF17 FEZF1 ZBTB40 RAD21 RFX5 ZNF366 FOS DEK BBOX1-AS1 CCDC34 LIN7C LOC105376600 GC11P027127
GH11I027199 Enhancer 1.4 Ensembl ENCODE dbSUPER 4.9 +17.0 16980 7.4 PKNOX1 FOXA2 ARNT SIN3A FEZF1 ZNF143 SP5 REST ZNF610 SMARCA4 LOC105376671 LIN7C BBOX1-AS1 LOC105376600 GC11P027127
GH11I027241 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 4.4 -22.3 -22298 2.5 HDAC1 MEIS2 PKNOX1 NFATC3 TEAD4 FEZF1 FOSL1 CTBP1 ZNF316 GATA2 BBOX1-AS1 BDNF LOC105376601
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BBOX1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BBOX1-AS1 Gene

Genomic Locations for BBOX1-AS1 Gene
chr11:27,047,186-27,220,113
(GRCh38/hg38)
Size:
172,928 bases
Orientation:
Minus strand
chr11:27,068,733-27,241,660
(GRCh37/hg19)

Genomic View for BBOX1-AS1 Gene

Genes around BBOX1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BBOX1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BBOX1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BBOX1-AS1 Gene

Proteins for BBOX1-AS1 Gene

Post-translational modifications for BBOX1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BBOX1-AS1 Gene

Domains & Families for BBOX1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BBOX1-AS1 Gene

Function for BBOX1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BBOX1-AS1 Gene

Localization for BBOX1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BBOX1-AS1 Gene

Pathways & Interactions for BBOX1-AS1 Gene

SuperPathways for BBOX1-AS1 Gene

No Data Available

Interacting Proteins for BBOX1-AS1 Gene

Gene Ontology (GO) - Biological Process for BBOX1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BBOX1-AS1 Gene

Drugs & Compounds for BBOX1-AS1 Gene

No Compound Related Data Available

Transcripts for BBOX1-AS1 Gene

mRNA/cDNA for BBOX1-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BBOX1-AS1 Gene

No ASD Table

Relevant External Links for BBOX1-AS1 Gene

GeneLoc Exon Structure for
BBOX1-AS1
ECgene alternative splicing isoforms for
BBOX1-AS1

Expression for BBOX1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BBOX1-AS1 Gene

genes like me logo Genes that share expression patterns with BBOX1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BBOX1-AS1 Gene

Orthologs for BBOX1-AS1 Gene

Evolution for BBOX1-AS1 Gene

ENSEMBL:
Gene Tree for BBOX1-AS1 (if available)
TreeFam:
Gene Tree for BBOX1-AS1 (if available)

No data available for Orthologs for BBOX1-AS1 Gene

Paralogs for BBOX1-AS1 Gene

No data available for Paralogs for BBOX1-AS1 Gene

Variants for BBOX1-AS1 Gene

Sequence variations from dbSNP and Humsavar for BBOX1-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000054683 -- 27,197,931(-) C/T intron_variant
rs1000055643 -- 27,166,875(-) T/C intron_variant
rs1000079446 -- 27,103,484(-) A/C intron_variant
rs1000125775 -- 27,165,310(-) T/C intron_variant
rs1000165140 -- 27,201,542(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BBOX1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1727n54 CNV gain 21841781
esv3625759 CNV gain 21293372
esv3625760 CNV gain 21293372
esv3625763 CNV loss 21293372
esv3625764 CNV gain 21293372
esv3625765 CNV loss 21293372
esv3891957 CNV gain 25118596
nsv1145510 CNV deletion 24896259
nsv467782 CNV gain 19166990
nsv508619 CNV deletion 20534489
nsv553914 CNV gain 21841781
nsv7720 CNV deletion 18451855

Additional Variant Information for BBOX1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BBOX1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BBOX1-AS1 Gene

Disorders for BBOX1-AS1 Gene

Additional Disease Information for BBOX1-AS1

No disorders were found for BBOX1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BBOX1-AS1 Gene

Publications for BBOX1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for BBOX1-AS1 Gene

Sources for BBOX1-AS1 Gene

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