BARX1-DT Gene (RNA Gene)

BARX1 Divergent Transcript

GC09P093956
GIFtS:
9
See more...

Aliases for BARX1-DT Gene

Subcategory (RNA class) for BARX1-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for BARX1-DT Gene

  • BARX1 Divergent Transcript 2 3 5
  • BARX1-DT 2 5 165
  • BARX1 Antisense RNA 1 (Head To Head) 2 3
  • NONHSAG052886.2 91
  • HSALNG0072870 164
  • BARX1-AS1 3

External Ids for BARX1-DT Gene

Previous HGNC Symbols for BARX1-DT Gene

  • BARX1-AS1

Summaries for BARX1-DT Gene

GeneCards Summary for BARX1-DT Gene

BARX1-DT (BARX1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BARX1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BARX1-DT Gene

Genomics for BARX1-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for BARX1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09J093954 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 606.2 +0.1 72 2 ZNF629 EZH2 ZNF341 KLF9 ZBTB20 SP2 ZEB1 POLR2A ZBTB17 WT1 BARX1-DT PTPDC1 BARX1 HSALNG0072874
GH09J093869 Enhancer 0.6 Ensembl CraniofacialAtlas 11.1 -85.9 -85926 1.2 MNT PAX8 KDM1A BARX1 BARX1-DT HSALNG0072863 piR-53063-266 PHF2
GH09J093949 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 5 -5.0 -5018 2.6 IKZF1 JUND ZNF24 EZH2 GABPA HMBOX1 EGR1 ZNF444 JUN ESRRA PTPDC1 BARX1-DT BARX1 HSALNG0072868 PHF2
GH09J094110 Enhancer 1 Ensembl ENCODE 5.4 +155.5 155458 1.2 LEF1 JUND DDX20 PKNOX1 BRD9 ZNF24 DPF2 HDAC1 SOX6 GATAD2B MIRLET7A1 MIRLET7D MIRLET7F1 BARX1-DT piR-55361-580 piR-45012-540 LOC107987099 PTPDC1
GH09J094097 Enhancer 0.7 Ensembl ENCODE 6.5 +141.6 141613 2.7 PRDM10 ZNF600 JUND ZNF316 ZSCAN5C FOS MAFK FOSL1 FOSL2 ZBTB40 MIRLET7D MIRLET7A1 MIRLET7F1 BARX1-DT piR-45012-540 piR-55361-580 LOC107987099 PTPDC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BARX1-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BARX1-DT Gene

Genomic Locations for BARX1-DT Gene
chr9:93,955,527-93,981,876
(GRCh38/hg38)
Size:
26,350 bases
Orientation:
Plus strand
chr9:96,717,879-96,721,422
(GRCh37/hg19)
Size:
3,544 bases
Orientation:
Plus strand

Genomic View for BARX1-DT Gene

Genes around BARX1-DT on UCSC Golden Path with GeneCards custom track
BARX1-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
BARX1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BARX1-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for BARX1-DT Gene

Proteins for BARX1-DT Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for BARX1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for BARX1-DT Gene

Domains & Families for BARX1-DT Gene

Gene Families for BARX1-DT Gene

HGNC:
genes like me logo Genes that share domains with BARX1-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BARX1-DT Gene

Function for BARX1-DT Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for BARX1-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BARX1-DT Gene

Localization for BARX1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BARX1-DT Gene

Pathways & Interactions for BARX1-DT Gene

PathCards logo

SuperPathways for BARX1-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for BARX1-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BARX1-DT Gene

Drugs & Compounds for BARX1-DT Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for BARX1-DT Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BARX1-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000355807_9606 lncRNA 1445 3

Ensembl: ENST00000453045 (view in UCSC) ,

LNCipedia: BARX1-DT:13,

NONCODE: NONHSAT133281.2,

URS0000314644_9606 lncRNA 307 3

Ensembl: ENST00000454594 (view in UCSC) ,

LNCipedia: BARX1-DT:12,

NONCODE: NONHSAT133280.2,

URS0000A766B2_9606 lncRNA 1445 2

HGNC: 50673,

RefSeq: NR_144455,

URS0000D5A936_9606 lncRNA 1752 2

LncBook: HSALNT0152317,

LNCipedia: BARX1-DT:8,

URS0000D5C821_9606 lncRNA 377 2

LncBook: HSALNT0152316,

LNCipedia: BARX1-DT:9,

BARX1-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for BARX1-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for BARX1-DT Gene

No ASD Table

Relevant External Links for BARX1-DT Gene

GeneLoc Exon Structure for
BARX1-DT

Expression for BARX1-DT Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BARX1-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BARX1-DT Gene

Orthologs for BARX1-DT Gene

Evolution for BARX1-DT Gene

ENSEMBL:
Gene Tree for BARX1-DT (if available)
TreeFam:
Gene Tree for BARX1-DT (if available)

No data available for Orthologs for BARX1-DT Gene

Paralogs for BARX1-DT Gene

No data available for Paralogs for BARX1-DT Gene

Variants for BARX1-DT Gene

Additional dbSNP identifiers (rs#s) for BARX1-DT Gene

Additional Variant Information for BARX1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BARX1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BARX1-DT Gene

Disorders for BARX1-DT Gene

Additional Disease Information for BARX1-DT

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for BARX1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BARX1-DT Gene

Publications for BARX1-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for BARX1-DT gene in Mastermind

Products for BARX1-DT Gene

Sources for BARX1-DT Gene